Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/test_anon_types.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 from typing import cast |
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2 |
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3 import pytest |
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4 from ruamel.yaml.comments import CommentedMap |
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5 from schema_salad.sourceline import cmap |
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6 |
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7 from cwltool.command_line_tool import CommandLineTool |
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8 from cwltool.context import LoadingContext |
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9 |
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10 snippet = cast( |
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11 CommentedMap, |
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12 cmap( |
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13 [ |
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14 { |
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15 "cwlVersion": "v1.0", |
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16 "class": "CommandLineTool", |
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17 "inputs": [ |
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18 { |
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19 "type": { |
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20 "type": "record", |
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21 "fields": [ |
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22 { |
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23 "type": [ |
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24 { |
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25 "type": "enum", |
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26 "symbols": [ |
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27 "anon_enum_inside_array.cwl#first/species/homo_sapiens", |
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28 "anon_enum_inside_array.cwl#first/species/mus_musculus", |
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29 ], |
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30 }, |
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31 "null", |
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32 ], |
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33 "name": "anon_enum_inside_array.cwl#first/species", |
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34 } |
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35 ], |
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36 }, |
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37 "id": "anon_enum_inside_array.cwl#first", |
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38 }, |
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39 { |
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40 "type": [ |
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41 "null", |
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42 { |
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43 "type": "enum", |
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44 "symbols": [ |
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45 "anon_enum_inside_array.cwl#second/homo_sapiens", |
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46 "anon_enum_inside_array.cwl#second/mus_musculus", |
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47 ], |
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48 }, |
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49 ], |
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50 "id": "anon_enum_inside_array.cwl#second", |
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51 }, |
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52 ], |
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53 "baseCommand": "echo", |
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54 "outputs": [], |
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55 "id": "anon_enum_inside_array.cwl", |
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56 }, |
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57 { |
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58 "cwlVersion": "v1.0", |
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59 "class": "CommandLineTool", |
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60 "requirements": [ |
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61 { |
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62 "types": [ |
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63 { |
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64 "name": "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params", |
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65 "type": "record", |
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66 "fields": [ |
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67 { |
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68 "type": [ |
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69 "null", |
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70 { |
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71 "type": "enum", |
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72 "symbols": [ |
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73 "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params/ncbi_build/GRCh37", |
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74 "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params/ncbi_build/GRCh38", |
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75 "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params/ncbi_build/GRCm38", |
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76 ], |
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77 }, |
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78 ], |
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79 "name": "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params/ncbi_build", |
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80 }, |
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81 { |
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82 "type": [ |
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83 "null", |
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84 { |
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85 "type": "enum", |
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86 "symbols": [ |
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87 "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params/species/homo_sapiens", |
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88 "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params/species/mus_musculus", |
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89 ], |
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90 }, |
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92 "name": "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params/species", |
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93 }, |
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94 ], |
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95 } |
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97 "class": "SchemaDefRequirement", |
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98 } |
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100 "inputs": [ |
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101 { |
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102 "type": "anon_enum_inside_array_inside_schemadef.cwl#vcf2maf_params", |
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103 "id": "anon_enum_inside_array_inside_schemadef.cwl#first", |
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104 } |
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106 "baseCommand": "echo", |
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107 "outputs": [], |
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108 "id": "anon_enum_inside_array_inside_schemadef.cwl", |
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109 }, |
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112 ) |
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114 |
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115 @pytest.mark.parametrize("snippet", snippet) |
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116 def test_anon_types(snippet: CommentedMap) -> None: |
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117 CommandLineTool(snippet, LoadingContext()) |