Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/galaxy/tool_util/cwl/runnable.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 """Lighter-weight variant of Planemo runnable outputs.""" |
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2 from galaxy.tool_util.parser import get_tool_source |
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3 from .parser import workflow_proxy |
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4 from .util import guess_artifact_type |
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5 |
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6 |
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7 def get_outputs(path): |
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8 tool_or_workflow = guess_artifact_type(path) |
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9 if tool_or_workflow == "tool": |
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10 tool_source = get_tool_source(path) |
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11 output_datasets, _ = tool_source.parse_outputs(None) |
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12 outputs = [ToolOutput(o) for o in output_datasets.values()] |
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13 return outputs |
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14 else: |
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15 workflow = workflow_proxy(path, strict_cwl_validation=False) |
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16 return [CwlWorkflowOutput(label) for label in workflow.output_labels] |
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17 |
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18 |
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19 class CwlWorkflowOutput: |
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20 |
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21 def __init__(self, label): |
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22 self._label = label |
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23 |
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24 def get_id(self): |
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25 return self._label |
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26 |
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27 |
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28 class ToolOutput: |
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29 |
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30 def __init__(self, tool_output): |
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31 self._tool_output = tool_output |
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32 |
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33 def get_id(self): |
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34 return self._tool_output.name |