Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/galaxy/tool_util/cwl/runnable.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"""Lighter-weight variant of Planemo runnable outputs.""" from galaxy.tool_util.parser import get_tool_source from .parser import workflow_proxy from .util import guess_artifact_type def get_outputs(path): tool_or_workflow = guess_artifact_type(path) if tool_or_workflow == "tool": tool_source = get_tool_source(path) output_datasets, _ = tool_source.parse_outputs(None) outputs = [ToolOutput(o) for o in output_datasets.values()] return outputs else: workflow = workflow_proxy(path, strict_cwl_validation=False) return [CwlWorkflowOutput(label) for label in workflow.output_labels] class CwlWorkflowOutput: def __init__(self, label): self._label = label def get_id(self): return self._label class ToolOutput: def __init__(self, tool_output): self._tool_output = tool_output def get_id(self): return self._tool_output.name