annotate env/lib/python3.9/site-packages/galaxy/tool_util/deps/resolvers/homebrew.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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1 """
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2 This file implements a brew resolver for Galaxy requirements. In order for Galaxy
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3 to pick up on recursively defined and versioned brew dependencies recipes should
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4 be installed using the experimental `brew-vinstall` external command.
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5
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6 More information here:
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7
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8 https://github.com/jmchilton/brew-tests
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9 https://github.com/Homebrew/homebrew-science/issues/1191
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10
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11 This is still an experimental module and there will almost certainly be backward
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12 incompatible changes coming.
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13 """
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14
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15 from . import (
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16 DependencyResolver,
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17 NullDependency
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18 )
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19 from .resolver_mixins import UsesHomebrewMixin
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20
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21 # TODO: Implement prefer version linked...
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22 PREFER_VERSION_LINKED = 'linked'
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23 PREFER_VERSION_LATEST = 'latest'
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24 UNKNOWN_PREFER_VERSION_MESSAGE_TEMPLATE = "HomebrewDependencyResolver prefer_version must be %s"
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25 UNKNOWN_PREFER_VERSION_MESSAGE = UNKNOWN_PREFER_VERSION_MESSAGE_TEMPLATE % (PREFER_VERSION_LATEST)
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26 DEFAULT_PREFER_VERSION = PREFER_VERSION_LATEST
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29 class HomebrewDependencyResolver(DependencyResolver, UsesHomebrewMixin):
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30 resolver_type = "homebrew"
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31
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32 def __init__(self, dependency_manager, **kwds):
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33 self.versionless = _string_as_bool(kwds.get('versionless', 'false'))
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34 self.prefer_version = kwds.get('prefer_version', None)
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35
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36 if self.prefer_version is None:
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37 self.prefer_version = DEFAULT_PREFER_VERSION
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38
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39 if self.versionless and self.prefer_version not in [PREFER_VERSION_LATEST]:
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40 raise Exception(UNKNOWN_PREFER_VERSION_MESSAGE)
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41
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42 self._init_homebrew(**kwds)
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43
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44 def resolve(self, requirement, **kwds):
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45 name, version, type = requirement.name, requirement.version, requirement.type
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46
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47 if type != "package":
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48 return NullDependency(version=version, name=name)
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49
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50 if version is None or self.versionless:
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51 return self._find_dep_default(name, version)
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52 else:
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53 return self._find_dep_versioned(name, version)
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54
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55
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56 def _string_as_bool(value):
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57 return str(value).lower() == "true"
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58
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59
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60 __all__ = ('HomebrewDependencyResolver', )