annotate env/lib/python3.9/site-packages/networkx/algorithms/shortest_paths/tests/test_weighted.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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1 import pytest
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2
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3 import networkx as nx
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4 from networkx.utils import pairwise
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5
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6
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7 def validate_path(G, s, t, soln_len, path, weight="weight"):
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8 assert path[0] == s
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9 assert path[-1] == t
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10
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11 if callable(weight):
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12 weight_f = weight
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13 else:
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14 if G.is_multigraph():
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15
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16 def weight_f(u, v, d):
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17 return min(e.get(weight, 1) for e in d.values())
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18
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19 else:
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20
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21 def weight_f(u, v, d):
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22 return d.get(weight, 1)
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23
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24 computed = sum(weight_f(u, v, G[u][v]) for u, v in pairwise(path))
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25 assert soln_len == computed
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26
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27
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28 def validate_length_path(G, s, t, soln_len, length, path, weight="weight"):
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29 assert soln_len == length
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30 validate_path(G, s, t, length, path, weight=weight)
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31
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32
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33 class WeightedTestBase:
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34 """Base class for test classes that test functions for computing
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35 shortest paths in weighted graphs.
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36
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37 """
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38
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39 def setup(self):
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40 """Creates some graphs for use in the unit tests."""
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41 cnlti = nx.convert_node_labels_to_integers
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42 self.grid = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
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43 self.cycle = nx.cycle_graph(7)
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44 self.directed_cycle = nx.cycle_graph(7, create_using=nx.DiGraph())
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45 self.XG = nx.DiGraph()
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46 self.XG.add_weighted_edges_from(
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47 [
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48 ("s", "u", 10),
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49 ("s", "x", 5),
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50 ("u", "v", 1),
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51 ("u", "x", 2),
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52 ("v", "y", 1),
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53 ("x", "u", 3),
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54 ("x", "v", 5),
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55 ("x", "y", 2),
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56 ("y", "s", 7),
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57 ("y", "v", 6),
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58 ]
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59 )
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60 self.MXG = nx.MultiDiGraph(self.XG)
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61 self.MXG.add_edge("s", "u", weight=15)
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62 self.XG2 = nx.DiGraph()
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63 self.XG2.add_weighted_edges_from(
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64 [
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65 [1, 4, 1],
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66 [4, 5, 1],
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67 [5, 6, 1],
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68 [6, 3, 1],
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69 [1, 3, 50],
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70 [1, 2, 100],
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71 [2, 3, 100],
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72 ]
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73 )
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74
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75 self.XG3 = nx.Graph()
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76 self.XG3.add_weighted_edges_from(
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77 [[0, 1, 2], [1, 2, 12], [2, 3, 1], [3, 4, 5], [4, 5, 1], [5, 0, 10]]
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78 )
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79
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80 self.XG4 = nx.Graph()
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81 self.XG4.add_weighted_edges_from(
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82 [
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83 [0, 1, 2],
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84 [1, 2, 2],
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85 [2, 3, 1],
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86 [3, 4, 1],
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87 [4, 5, 1],
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88 [5, 6, 1],
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89 [6, 7, 1],
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90 [7, 0, 1],
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91 ]
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92 )
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93 self.MXG4 = nx.MultiGraph(self.XG4)
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94 self.MXG4.add_edge(0, 1, weight=3)
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95 self.G = nx.DiGraph() # no weights
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96 self.G.add_edges_from(
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97 [
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98 ("s", "u"),
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99 ("s", "x"),
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100 ("u", "v"),
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101 ("u", "x"),
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102 ("v", "y"),
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103 ("x", "u"),
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104 ("x", "v"),
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105 ("x", "y"),
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106 ("y", "s"),
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107 ("y", "v"),
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108 ]
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109 )
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110
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111
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112 class TestWeightedPath(WeightedTestBase):
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113 def test_dijkstra(self):
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114 (D, P) = nx.single_source_dijkstra(self.XG, "s")
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115 validate_path(self.XG, "s", "v", 9, P["v"])
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116 assert D["v"] == 9
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117
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118 validate_path(
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119 self.XG, "s", "v", 9, nx.single_source_dijkstra_path(self.XG, "s")["v"]
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120 )
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121 assert dict(nx.single_source_dijkstra_path_length(self.XG, "s"))["v"] == 9
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122
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123 validate_path(
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124 self.XG, "s", "v", 9, nx.single_source_dijkstra(self.XG, "s")[1]["v"]
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125 )
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126 validate_path(
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127 self.MXG, "s", "v", 9, nx.single_source_dijkstra_path(self.MXG, "s")["v"]
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128 )
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129
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130 GG = self.XG.to_undirected()
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131 # make sure we get lower weight
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132 # to_undirected might choose either edge with weight 2 or weight 3
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133 GG["u"]["x"]["weight"] = 2
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134 (D, P) = nx.single_source_dijkstra(GG, "s")
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135 validate_path(GG, "s", "v", 8, P["v"])
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136 assert D["v"] == 8 # uses lower weight of 2 on u<->x edge
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137 validate_path(GG, "s", "v", 8, nx.dijkstra_path(GG, "s", "v"))
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138 assert nx.dijkstra_path_length(GG, "s", "v") == 8
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139
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140 validate_path(self.XG2, 1, 3, 4, nx.dijkstra_path(self.XG2, 1, 3))
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141 validate_path(self.XG3, 0, 3, 15, nx.dijkstra_path(self.XG3, 0, 3))
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142 assert nx.dijkstra_path_length(self.XG3, 0, 3) == 15
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143 validate_path(self.XG4, 0, 2, 4, nx.dijkstra_path(self.XG4, 0, 2))
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144 assert nx.dijkstra_path_length(self.XG4, 0, 2) == 4
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145 validate_path(self.MXG4, 0, 2, 4, nx.dijkstra_path(self.MXG4, 0, 2))
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146 validate_path(
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147 self.G, "s", "v", 2, nx.single_source_dijkstra(self.G, "s", "v")[1]
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148 )
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149 validate_path(
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150 self.G, "s", "v", 2, nx.single_source_dijkstra(self.G, "s")[1]["v"]
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151 )
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152
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153 validate_path(self.G, "s", "v", 2, nx.dijkstra_path(self.G, "s", "v"))
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154 assert nx.dijkstra_path_length(self.G, "s", "v") == 2
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155
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156 # NetworkXError: node s not reachable from moon
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157 pytest.raises(nx.NetworkXNoPath, nx.dijkstra_path, self.G, "s", "moon")
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158 pytest.raises(nx.NetworkXNoPath, nx.dijkstra_path_length, self.G, "s", "moon")
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159
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160 validate_path(self.cycle, 0, 3, 3, nx.dijkstra_path(self.cycle, 0, 3))
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161 validate_path(self.cycle, 0, 4, 3, nx.dijkstra_path(self.cycle, 0, 4))
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162
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163 assert nx.single_source_dijkstra(self.cycle, 0, 0) == (0, [0])
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164
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165 def test_bidirectional_dijkstra(self):
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166 validate_length_path(
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167 self.XG, "s", "v", 9, *nx.bidirectional_dijkstra(self.XG, "s", "v")
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168 )
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169 validate_length_path(
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170 self.G, "s", "v", 2, *nx.bidirectional_dijkstra(self.G, "s", "v")
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171 )
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172 validate_length_path(
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173 self.cycle, 0, 3, 3, *nx.bidirectional_dijkstra(self.cycle, 0, 3)
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174 )
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175 validate_length_path(
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176 self.cycle, 0, 4, 3, *nx.bidirectional_dijkstra(self.cycle, 0, 4)
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177 )
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178 validate_length_path(
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179 self.XG3, 0, 3, 15, *nx.bidirectional_dijkstra(self.XG3, 0, 3)
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180 )
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181 validate_length_path(
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182 self.XG4, 0, 2, 4, *nx.bidirectional_dijkstra(self.XG4, 0, 2)
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183 )
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184
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185 # need more tests here
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186 P = nx.single_source_dijkstra_path(self.XG, "s")["v"]
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187 validate_path(
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188 self.XG,
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189 "s",
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190 "v",
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191 sum(self.XG[u][v]["weight"] for u, v in zip(P[:-1], P[1:])),
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192 nx.dijkstra_path(self.XG, "s", "v"),
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193 )
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194
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195 # check absent source
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196 G = nx.path_graph(2)
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197 pytest.raises(nx.NodeNotFound, nx.bidirectional_dijkstra, G, 3, 0)
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198
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199 def test_weight_functions(self):
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200 def heuristic(*z):
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201 return hash(z)
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202
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203 def getpath(pred, v, s):
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204 return [v] if v == s else getpath(pred, pred[v], s) + [v]
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205
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206 def goldberg_radzik(g, s, t, weight="weight"):
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207 pred, dist = nx.goldberg_radzik(g, s, weight=weight)
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208 dist = dist[t]
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209 return dist, getpath(pred, t, s)
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210
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211 def astar(g, s, t, weight="weight"):
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212 path = nx.astar_path(g, s, t, heuristic, weight=weight)
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213 dist = nx.astar_path_length(g, s, t, heuristic, weight=weight)
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214 return dist, path
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215
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216 def vlp(G, s, t, l, F, w):
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217 res = F(G, s, t, weight=w)
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218 validate_length_path(G, s, t, l, *res, weight=w)
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219
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220 G = self.cycle
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221 s = 6
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222 t = 4
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223 path = [6] + list(range(t + 1))
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224
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225 def weight(u, v, _):
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226 return 1 + v ** 2
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227
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228 length = sum(weight(u, v, None) for u, v in pairwise(path))
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229 vlp(G, s, t, length, nx.bidirectional_dijkstra, weight)
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230 vlp(G, s, t, length, nx.single_source_dijkstra, weight)
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231 vlp(G, s, t, length, nx.single_source_bellman_ford, weight)
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232 vlp(G, s, t, length, goldberg_radzik, weight)
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233 vlp(G, s, t, length, astar, weight)
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234
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235 def weight(u, v, _):
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236 return 2 ** (u * v)
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237
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238 length = sum(weight(u, v, None) for u, v in pairwise(path))
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239 vlp(G, s, t, length, nx.bidirectional_dijkstra, weight)
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240 vlp(G, s, t, length, nx.single_source_dijkstra, weight)
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241 vlp(G, s, t, length, nx.single_source_bellman_ford, weight)
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242 vlp(G, s, t, length, goldberg_radzik, weight)
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243 vlp(G, s, t, length, astar, weight)
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244
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245 def test_bidirectional_dijkstra_no_path(self):
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246 with pytest.raises(nx.NetworkXNoPath):
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247 G = nx.Graph()
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248 nx.add_path(G, [1, 2, 3])
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249 nx.add_path(G, [4, 5, 6])
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250 path = nx.bidirectional_dijkstra(G, 1, 6)
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251
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252 def test_absent_source(self):
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253 # the check is in _dijkstra_multisource, but this will provide
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254 # regression testing against later changes to any of the "client"
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255 # Dijkstra or Bellman-Ford functions
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256 G = nx.path_graph(2)
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257 for fn in (
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258 nx.dijkstra_path,
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259 nx.dijkstra_path_length,
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260 nx.single_source_dijkstra_path,
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261 nx.single_source_dijkstra_path_length,
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262 nx.single_source_dijkstra,
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263 nx.dijkstra_predecessor_and_distance,
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264 ):
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265 pytest.raises(nx.NodeNotFound, fn, G, 3, 0)
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266
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267 def test_dijkstra_predecessor1(self):
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268 G = nx.path_graph(4)
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269 assert nx.dijkstra_predecessor_and_distance(G, 0) == (
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270 {0: [], 1: [0], 2: [1], 3: [2]},
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271 {0: 0, 1: 1, 2: 2, 3: 3},
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272 )
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273
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274 def test_dijkstra_predecessor2(self):
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275 # 4-cycle
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276 G = nx.Graph([(0, 1), (1, 2), (2, 3), (3, 0)])
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277 pred, dist = nx.dijkstra_predecessor_and_distance(G, (0))
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278 assert pred[0] == []
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279 assert pred[1] == [0]
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280 assert pred[2] in [[1, 3], [3, 1]]
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281 assert pred[3] == [0]
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282 assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
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283
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284 def test_dijkstra_predecessor3(self):
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285 XG = nx.DiGraph()
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286 XG.add_weighted_edges_from(
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287 [
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288 ("s", "u", 10),
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289 ("s", "x", 5),
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290 ("u", "v", 1),
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291 ("u", "x", 2),
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292 ("v", "y", 1),
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293 ("x", "u", 3),
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294 ("x", "v", 5),
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295 ("x", "y", 2),
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296 ("y", "s", 7),
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297 ("y", "v", 6),
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298 ]
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299 )
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300 (P, D) = nx.dijkstra_predecessor_and_distance(XG, "s")
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301 assert P["v"] == ["u"]
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302 assert D["v"] == 9
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303 (P, D) = nx.dijkstra_predecessor_and_distance(XG, "s", cutoff=8)
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304 assert "v" not in D
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305
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306 def test_single_source_dijkstra_path_length(self):
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307 pl = nx.single_source_dijkstra_path_length
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308 assert dict(pl(self.MXG4, 0))[2] == 4
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309 spl = pl(self.MXG4, 0, cutoff=2)
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310 assert 2 not in spl
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311
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312 def test_bidirectional_dijkstra_multigraph(self):
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313 G = nx.MultiGraph()
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314 G.add_edge("a", "b", weight=10)
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315 G.add_edge("a", "b", weight=100)
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316 dp = nx.bidirectional_dijkstra(G, "a", "b")
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317 assert dp == (10, ["a", "b"])
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318
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319 def test_dijkstra_pred_distance_multigraph(self):
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320 G = nx.MultiGraph()
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321 G.add_edge("a", "b", key="short", foo=5, weight=100)
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322 G.add_edge("a", "b", key="long", bar=1, weight=110)
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323 p, d = nx.dijkstra_predecessor_and_distance(G, "a")
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324 assert p == {"a": [], "b": ["a"]}
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325 assert d == {"a": 0, "b": 100}
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326
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327 def test_negative_edge_cycle(self):
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328 G = nx.cycle_graph(5, create_using=nx.DiGraph())
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329 assert not nx.negative_edge_cycle(G)
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330 G.add_edge(8, 9, weight=-7)
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331 G.add_edge(9, 8, weight=3)
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332 graph_size = len(G)
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333 assert nx.negative_edge_cycle(G)
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334 assert graph_size == len(G)
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335 pytest.raises(ValueError, nx.single_source_dijkstra_path_length, G, 8)
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336 pytest.raises(ValueError, nx.single_source_dijkstra, G, 8)
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337 pytest.raises(ValueError, nx.dijkstra_predecessor_and_distance, G, 8)
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338 G.add_edge(9, 10)
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339 pytest.raises(ValueError, nx.bidirectional_dijkstra, G, 8, 10)
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340
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341 def test_weight_function(self):
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342 """Tests that a callable weight is interpreted as a weight
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343 function instead of an edge attribute.
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344
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345 """
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346 # Create a triangle in which the edge from node 0 to node 2 has
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347 # a large weight and the other two edges have a small weight.
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348 G = nx.complete_graph(3)
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349 G.adj[0][2]["weight"] = 10
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350 G.adj[0][1]["weight"] = 1
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351 G.adj[1][2]["weight"] = 1
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352 # The weight function will take the multiplicative inverse of
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353 # the weights on the edges. This way, weights that were large
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354 # before now become small and vice versa.
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355
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356 def weight(u, v, d):
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357 return 1 / d["weight"]
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358
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359 # The shortest path from 0 to 2 using the actual weights on the
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360 # edges should be [0, 1, 2].
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361 distance, path = nx.single_source_dijkstra(G, 0, 2)
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362 assert distance == 2
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363 assert path == [0, 1, 2]
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364 # However, with the above weight function, the shortest path
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365 # should be [0, 2], since that has a very small weight.
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366 distance, path = nx.single_source_dijkstra(G, 0, 2, weight=weight)
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367 assert distance == 1 / 10
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368 assert path == [0, 2]
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369
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370 def test_all_pairs_dijkstra_path(self):
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371 cycle = nx.cycle_graph(7)
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372 p = dict(nx.all_pairs_dijkstra_path(cycle))
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373 assert p[0][3] == [0, 1, 2, 3]
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374
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375 cycle[1][2]["weight"] = 10
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376 p = dict(nx.all_pairs_dijkstra_path(cycle))
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377 assert p[0][3] == [0, 6, 5, 4, 3]
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378
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379 def test_all_pairs_dijkstra_path_length(self):
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380 cycle = nx.cycle_graph(7)
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381 pl = dict(nx.all_pairs_dijkstra_path_length(cycle))
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382 assert pl[0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
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383
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384 cycle[1][2]["weight"] = 10
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385 pl = dict(nx.all_pairs_dijkstra_path_length(cycle))
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386 assert pl[0] == {0: 0, 1: 1, 2: 5, 3: 4, 4: 3, 5: 2, 6: 1}
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387
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388 def test_all_pairs_dijkstra(self):
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389 cycle = nx.cycle_graph(7)
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390 out = dict(nx.all_pairs_dijkstra(cycle))
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391 assert out[0][0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
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392 assert out[0][1][3] == [0, 1, 2, 3]
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393
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394 cycle[1][2]["weight"] = 10
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395 out = dict(nx.all_pairs_dijkstra(cycle))
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396 assert out[0][0] == {0: 0, 1: 1, 2: 5, 3: 4, 4: 3, 5: 2, 6: 1}
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397 assert out[0][1][3] == [0, 6, 5, 4, 3]
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398
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399
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400 class TestDijkstraPathLength:
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401 """Unit tests for the :func:`networkx.dijkstra_path_length`
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402 function.
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403
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404 """
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405
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406 def test_weight_function(self):
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407 """Tests for computing the length of the shortest path using
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408 Dijkstra's algorithm with a user-defined weight function.
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409
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410 """
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411 # Create a triangle in which the edge from node 0 to node 2 has
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412 # a large weight and the other two edges have a small weight.
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413 G = nx.complete_graph(3)
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414 G.adj[0][2]["weight"] = 10
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415 G.adj[0][1]["weight"] = 1
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416 G.adj[1][2]["weight"] = 1
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417 # The weight function will take the multiplicative inverse of
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418 # the weights on the edges. This way, weights that were large
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419 # before now become small and vice versa.
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420
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421 def weight(u, v, d):
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422 return 1 / d["weight"]
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423
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424 # The shortest path from 0 to 2 using the actual weights on the
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425 # edges should be [0, 1, 2]. However, with the above weight
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426 # function, the shortest path should be [0, 2], since that has a
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427 # very small weight.
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428 length = nx.dijkstra_path_length(G, 0, 2, weight=weight)
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429 assert length == 1 / 10
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430
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431
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432 class TestMultiSourceDijkstra:
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433 """Unit tests for the multi-source dialect of Dijkstra's shortest
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434 path algorithms.
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435
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436 """
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437
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438 def test_no_sources(self):
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439 with pytest.raises(ValueError):
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440 nx.multi_source_dijkstra(nx.Graph(), {})
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441
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442 def test_path_no_sources(self):
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443 with pytest.raises(ValueError):
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444 nx.multi_source_dijkstra_path(nx.Graph(), {})
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445
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446 def test_path_length_no_sources(self):
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447 with pytest.raises(ValueError):
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448 nx.multi_source_dijkstra_path_length(nx.Graph(), {})
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449
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450 def test_absent_source(self):
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451 G = nx.path_graph(2)
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452 for fn in (
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453 nx.multi_source_dijkstra_path,
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454 nx.multi_source_dijkstra_path_length,
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455 nx.multi_source_dijkstra,
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456 ):
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457 pytest.raises(nx.NodeNotFound, fn, G, [3], 0)
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458
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459 def test_two_sources(self):
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460 edges = [(0, 1, 1), (1, 2, 1), (2, 3, 10), (3, 4, 1)]
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461 G = nx.Graph()
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462 G.add_weighted_edges_from(edges)
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463 sources = {0, 4}
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464 distances, paths = nx.multi_source_dijkstra(G, sources)
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465 expected_distances = {0: 0, 1: 1, 2: 2, 3: 1, 4: 0}
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466 expected_paths = {0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [4, 3], 4: [4]}
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467 assert distances == expected_distances
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468 assert paths == expected_paths
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469
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470 def test_simple_paths(self):
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471 G = nx.path_graph(4)
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472 lengths = nx.multi_source_dijkstra_path_length(G, [0])
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473 assert lengths == {n: n for n in G}
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474 paths = nx.multi_source_dijkstra_path(G, [0])
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475 assert paths == {n: list(range(n + 1)) for n in G}
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476
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477
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478 class TestBellmanFordAndGoldbergRadzik(WeightedTestBase):
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479 def test_single_node_graph(self):
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480 G = nx.DiGraph()
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481 G.add_node(0)
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482 assert nx.single_source_bellman_ford_path(G, 0) == {0: [0]}
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483 assert nx.single_source_bellman_ford_path_length(G, 0) == {0: 0}
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diff changeset
484 assert nx.single_source_bellman_ford(G, 0) == ({0: 0}, {0: [0]})
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parents:
diff changeset
485 assert nx.bellman_ford_predecessor_and_distance(G, 0) == ({0: []}, {0: 0})
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
486 assert nx.goldberg_radzik(G, 0) == ({0: None}, {0: 0})
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parents:
diff changeset
487
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parents:
diff changeset
488 def test_absent_source_bellman_ford(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
489 # the check is in _bellman_ford; this provides regression testing
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parents:
diff changeset
490 # against later changes to "client" Bellman-Ford functions
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parents:
diff changeset
491 G = nx.path_graph(2)
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parents:
diff changeset
492 for fn in (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
493 nx.bellman_ford_predecessor_and_distance,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
494 nx.bellman_ford_path,
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parents:
diff changeset
495 nx.bellman_ford_path_length,
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shellac
parents:
diff changeset
496 nx.single_source_bellman_ford_path,
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shellac
parents:
diff changeset
497 nx.single_source_bellman_ford_path_length,
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shellac
parents:
diff changeset
498 nx.single_source_bellman_ford,
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parents:
diff changeset
499 ):
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parents:
diff changeset
500 pytest.raises(nx.NodeNotFound, fn, G, 3, 0)
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parents:
diff changeset
501
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parents:
diff changeset
502 def test_absent_source_goldberg_radzik(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
503 with pytest.raises(nx.NodeNotFound):
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parents:
diff changeset
504 G = nx.path_graph(2)
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parents:
diff changeset
505 nx.goldberg_radzik(G, 3, 0)
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parents:
diff changeset
506
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parents:
diff changeset
507 def test_negative_weight_cycle_heuristic(self):
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parents:
diff changeset
508 G = nx.DiGraph()
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parents:
diff changeset
509 G.add_edge(0, 1, weight=-1)
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parents:
diff changeset
510 G.add_edge(1, 2, weight=-1)
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parents:
diff changeset
511 G.add_edge(2, 3, weight=-1)
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parents:
diff changeset
512 G.add_edge(3, 0, weight=3)
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parents:
diff changeset
513 assert not nx.negative_edge_cycle(G, heuristic=True)
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shellac
parents:
diff changeset
514 G.add_edge(2, 0, weight=1.999)
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parents:
diff changeset
515 assert nx.negative_edge_cycle(G, heuristic=True)
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parents:
diff changeset
516 G.edges[2, 0]["weight"] = 2
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parents:
diff changeset
517 assert not nx.negative_edge_cycle(G, heuristic=True)
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parents:
diff changeset
518
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parents:
diff changeset
519 def test_negative_weight_cycle_consistency(self):
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parents:
diff changeset
520 import random
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parents:
diff changeset
521
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parents:
diff changeset
522 unif = random.uniform
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parents:
diff changeset
523 for random_seed in range(2): # range(20):
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parents:
diff changeset
524 random.seed(random_seed)
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shellac
parents:
diff changeset
525 for density in [0.1, 0.9]: # .3, .7, .9]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
526 for N in [1, 10, 20]: # range(1, 60 - int(30 * density)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
527 for max_cost in [1, 90]: # [1, 10, 40, 90]:
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shellac
parents:
diff changeset
528 G = nx.binomial_graph(N, density, seed=4, directed=True)
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shellac
parents:
diff changeset
529 edges = ((u, v, unif(-1, max_cost)) for u, v in G.edges)
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shellac
parents:
diff changeset
530 G.add_weighted_edges_from(edges)
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parents:
diff changeset
531
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parents:
diff changeset
532 no_heuristic = nx.negative_edge_cycle(G, heuristic=False)
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shellac
parents:
diff changeset
533 with_heuristic = nx.negative_edge_cycle(G, heuristic=True)
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shellac
parents:
diff changeset
534 assert no_heuristic == with_heuristic
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parents:
diff changeset
535
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shellac
parents:
diff changeset
536 def test_negative_weight_cycle(self):
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shellac
parents:
diff changeset
537 G = nx.cycle_graph(5, create_using=nx.DiGraph())
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shellac
parents:
diff changeset
538 G.add_edge(1, 2, weight=-7)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
539 for i in range(5):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
540 pytest.raises(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
541 nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, i
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
542 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
543 pytest.raises(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
544 nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, i
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
545 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
546 pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, i)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
547 pytest.raises(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
548 nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, i
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
549 )
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shellac
parents:
diff changeset
550 pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, i)
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shellac
parents:
diff changeset
551 G = nx.cycle_graph(5) # undirected Graph
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
552 G.add_edge(1, 2, weight=-3)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
553 for i in range(5):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
554 pytest.raises(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
555 nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, i
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
556 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
557 pytest.raises(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
558 nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, i
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
559 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
560 pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, i)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
561 pytest.raises(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
562 nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, i
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
563 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
564 pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, i)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
565 G = nx.DiGraph([(1, 1, {"weight": -1})])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
566 pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, 1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
567 pytest.raises(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
568 nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
569 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
570 pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, 1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
571 pytest.raises(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
572 nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
573 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
574 pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, 1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
575 # no negative cycle but negative weight
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
576 G = nx.cycle_graph(5, create_using=nx.DiGraph())
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
577 G.add_edge(1, 2, weight=-3)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
578 assert nx.single_source_bellman_ford_path(G, 0) == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
579 0: [0],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
580 1: [0, 1],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
581 2: [0, 1, 2],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
582 3: [0, 1, 2, 3],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
583 4: [0, 1, 2, 3, 4],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
584 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
585 assert nx.single_source_bellman_ford_path_length(G, 0) == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
586 0: 0,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
587 1: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
588 2: -2,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
589 3: -1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
590 4: 0,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
591 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
592 assert nx.single_source_bellman_ford(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
593 {0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
594 {0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [0, 1, 2, 3], 4: [0, 1, 2, 3, 4]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
595 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
596 assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
597 {0: [], 1: [0], 2: [1], 3: [2], 4: [3]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
598 {0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
599 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
600 assert nx.goldberg_radzik(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
601 {0: None, 1: 0, 2: 1, 3: 2, 4: 3},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
602 {0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
603 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
604
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
605 def test_not_connected(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
606 G = nx.complete_graph(6)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
607 G.add_edge(10, 11)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
608 G.add_edge(10, 12)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
609 assert nx.single_source_bellman_ford_path(G, 0) == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
610 0: [0],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
611 1: [0, 1],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
612 2: [0, 2],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
613 3: [0, 3],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
614 4: [0, 4],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
615 5: [0, 5],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
616 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
617 assert nx.single_source_bellman_ford_path_length(G, 0) == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
618 0: 0,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
619 1: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
620 2: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
621 3: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
622 4: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
623 5: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
624 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
625 assert nx.single_source_bellman_ford(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
626 {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
627 {0: [0], 1: [0, 1], 2: [0, 2], 3: [0, 3], 4: [0, 4], 5: [0, 5]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
628 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
629 assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
630 {0: [], 1: [0], 2: [0], 3: [0], 4: [0], 5: [0]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
631 {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
632 )
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parents:
diff changeset
633 assert nx.goldberg_radzik(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
634 {0: None, 1: 0, 2: 0, 3: 0, 4: 0, 5: 0},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
635 {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
636 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
637
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
638 # not connected, with a component not containing the source that
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
639 # contains a negative cost cycle.
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
640 G = nx.complete_graph(6)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
641 G.add_edges_from(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
642 [
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
643 ("A", "B", {"load": 3}),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
644 ("B", "C", {"load": -10}),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
645 ("C", "A", {"load": 2}),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
646 ]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
647 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
648 assert nx.single_source_bellman_ford_path(G, 0, weight="load") == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
649 0: [0],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
650 1: [0, 1],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
651 2: [0, 2],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
652 3: [0, 3],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
653 4: [0, 4],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
654 5: [0, 5],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
655 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
656 assert nx.single_source_bellman_ford_path_length(G, 0, weight="load") == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
657 0: 0,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
658 1: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
659 2: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
660 3: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
661 4: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
662 5: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
663 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
664 assert nx.single_source_bellman_ford(G, 0, weight="load") == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
665 {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
666 {0: [0], 1: [0, 1], 2: [0, 2], 3: [0, 3], 4: [0, 4], 5: [0, 5]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
667 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
668 assert nx.bellman_ford_predecessor_and_distance(G, 0, weight="load") == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
669 {0: [], 1: [0], 2: [0], 3: [0], 4: [0], 5: [0]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
670 {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
671 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
672 assert nx.goldberg_radzik(G, 0, weight="load") == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
673 {0: None, 1: 0, 2: 0, 3: 0, 4: 0, 5: 0},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
674 {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
675 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
676
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
677 def test_multigraph(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
678 assert nx.bellman_ford_path(self.MXG, "s", "v") == ["s", "x", "u", "v"]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
679 assert nx.bellman_ford_path_length(self.MXG, "s", "v") == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
680 assert nx.single_source_bellman_ford_path(self.MXG, "s")["v"] == [
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
681 "s",
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
682 "x",
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
683 "u",
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
684 "v",
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
685 ]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
686 assert nx.single_source_bellman_ford_path_length(self.MXG, "s")["v"] == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
687 D, P = nx.single_source_bellman_ford(self.MXG, "s", target="v")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
688 assert D == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
689 assert P == ["s", "x", "u", "v"]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
690 P, D = nx.bellman_ford_predecessor_and_distance(self.MXG, "s")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
691 assert P["v"] == ["u"]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
692 assert D["v"] == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
693 P, D = nx.goldberg_radzik(self.MXG, "s")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
694 assert P["v"] == "u"
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
695 assert D["v"] == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
696 assert nx.bellman_ford_path(self.MXG4, 0, 2) == [0, 1, 2]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
697 assert nx.bellman_ford_path_length(self.MXG4, 0, 2) == 4
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
698 assert nx.single_source_bellman_ford_path(self.MXG4, 0)[2] == [0, 1, 2]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
699 assert nx.single_source_bellman_ford_path_length(self.MXG4, 0)[2] == 4
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
700 D, P = nx.single_source_bellman_ford(self.MXG4, 0, target=2)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
701 assert D == 4
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
702 assert P == [0, 1, 2]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
703 P, D = nx.bellman_ford_predecessor_and_distance(self.MXG4, 0)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
704 assert P[2] == [1]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
705 assert D[2] == 4
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
706 P, D = nx.goldberg_radzik(self.MXG4, 0)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
707 assert P[2] == 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
708 assert D[2] == 4
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
709
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
710 def test_others(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
711 assert nx.bellman_ford_path(self.XG, "s", "v") == ["s", "x", "u", "v"]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
712 assert nx.bellman_ford_path_length(self.XG, "s", "v") == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
713 assert nx.single_source_bellman_ford_path(self.XG, "s")["v"] == [
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
714 "s",
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
715 "x",
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
716 "u",
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
717 "v",
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
718 ]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
719 assert nx.single_source_bellman_ford_path_length(self.XG, "s")["v"] == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
720 D, P = nx.single_source_bellman_ford(self.XG, "s", target="v")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
721 assert D == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
722 assert P == ["s", "x", "u", "v"]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
723 (P, D) = nx.bellman_ford_predecessor_and_distance(self.XG, "s")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
724 assert P["v"] == ["u"]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
725 assert D["v"] == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
726 (P, D) = nx.goldberg_radzik(self.XG, "s")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
727 assert P["v"] == "u"
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
728 assert D["v"] == 9
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
729
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
730 def test_path_graph(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
731 G = nx.path_graph(4)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
732 assert nx.single_source_bellman_ford_path(G, 0) == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
733 0: [0],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
734 1: [0, 1],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
735 2: [0, 1, 2],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
736 3: [0, 1, 2, 3],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
737 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
738 assert nx.single_source_bellman_ford_path_length(G, 0) == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
739 0: 0,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
740 1: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
741 2: 2,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
742 3: 3,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
743 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
744 assert nx.single_source_bellman_ford(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
745 {0: 0, 1: 1, 2: 2, 3: 3},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
746 {0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [0, 1, 2, 3]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
747 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
748 assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
749 {0: [], 1: [0], 2: [1], 3: [2]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
750 {0: 0, 1: 1, 2: 2, 3: 3},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
751 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
752 assert nx.goldberg_radzik(G, 0) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
753 {0: None, 1: 0, 2: 1, 3: 2},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
754 {0: 0, 1: 1, 2: 2, 3: 3},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
755 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
756 assert nx.single_source_bellman_ford_path(G, 3) == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
757 0: [3, 2, 1, 0],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
758 1: [3, 2, 1],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
759 2: [3, 2],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
760 3: [3],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
761 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
762 assert nx.single_source_bellman_ford_path_length(G, 3) == {
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
763 0: 3,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
764 1: 2,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
765 2: 1,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
766 3: 0,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
767 }
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
768 assert nx.single_source_bellman_ford(G, 3) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
769 {0: 3, 1: 2, 2: 1, 3: 0},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
770 {0: [3, 2, 1, 0], 1: [3, 2, 1], 2: [3, 2], 3: [3]},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
771 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
772 assert nx.bellman_ford_predecessor_and_distance(G, 3) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
773 {0: [1], 1: [2], 2: [3], 3: []},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
774 {0: 3, 1: 2, 2: 1, 3: 0},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
775 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
776 assert nx.goldberg_radzik(G, 3) == (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
777 {0: 1, 1: 2, 2: 3, 3: None},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
778 {0: 3, 1: 2, 2: 1, 3: 0},
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
779 )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
780
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
781 def test_4_cycle(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
782 # 4-cycle
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
783 G = nx.Graph([(0, 1), (1, 2), (2, 3), (3, 0)])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
784 dist, path = nx.single_source_bellman_ford(G, 0)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
785 assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
786 assert path[0] == [0]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
787 assert path[1] == [0, 1]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
788 assert path[2] in [[0, 1, 2], [0, 3, 2]]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
789 assert path[3] == [0, 3]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
790
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
791 pred, dist = nx.bellman_ford_predecessor_and_distance(G, 0)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
792 assert pred[0] == []
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
793 assert pred[1] == [0]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
794 assert pred[2] in [[1, 3], [3, 1]]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
795 assert pred[3] == [0]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
796 assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
797
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
798 pred, dist = nx.goldberg_radzik(G, 0)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
799 assert pred[0] is None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
800 assert pred[1] == 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
801 assert pred[2] in [1, 3]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
802 assert pred[3] == 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
803 assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
804
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
805 def test_negative_weight(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
806 G = nx.DiGraph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
807 G.add_nodes_from("abcd")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
808 G.add_edge("a", "d", weight=0)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
809 G.add_edge("a", "b", weight=1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
810 G.add_edge("b", "c", weight=-3)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
811 G.add_edge("c", "d", weight=1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
812
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
813 assert nx.bellman_ford_path(G, "a", "d") == ["a", "b", "c", "d"]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
814 assert nx.bellman_ford_path_length(G, "a", "d") == -1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
815
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
816 def test_zero_cycle_smoke(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
817 D = nx.DiGraph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
818 D.add_weighted_edges_from([(0, 1, 1), (1, 2, 1), (2, 3, 1), (3, 1, -2)])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
819
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
820 nx.bellman_ford_path(D, 1, 3)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
821 nx.dijkstra_path(D, 1, 3)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
822 nx.bidirectional_dijkstra(D, 1, 3)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
823 # FIXME nx.goldberg_radzik(D, 1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
824
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
825
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
826 class TestJohnsonAlgorithm(WeightedTestBase):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
827 def test_single_node_graph(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
828 with pytest.raises(nx.NetworkXError):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
829 G = nx.DiGraph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
830 G.add_node(0)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
831 nx.johnson(G)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
832
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
833 def test_negative_cycle(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
834 G = nx.DiGraph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
835 G.add_weighted_edges_from(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
836 [
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
837 ("0", "3", 3),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
838 ("0", "1", -5),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
839 ("1", "0", -5),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
840 ("0", "2", 2),
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841 ("1", "2", 4),
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842 ("2", "3", 1),
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843 ]
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844 )
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845 pytest.raises(nx.NetworkXUnbounded, nx.johnson, G)
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846 G = nx.Graph()
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847 G.add_weighted_edges_from(
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848 [
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849 ("0", "3", 3),
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850 ("0", "1", -5),
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851 ("1", "0", -5),
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852 ("0", "2", 2),
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853 ("1", "2", 4),
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854 ("2", "3", 1),
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855 ]
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856 )
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857 pytest.raises(nx.NetworkXUnbounded, nx.johnson, G)
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858
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859 def test_negative_weights(self):
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860 G = nx.DiGraph()
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861 G.add_weighted_edges_from(
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862 [("0", "3", 3), ("0", "1", -5), ("0", "2", 2), ("1", "2", 4), ("2", "3", 1)]
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863 )
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864 paths = nx.johnson(G)
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865 assert paths == {
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866 "1": {"1": ["1"], "3": ["1", "2", "3"], "2": ["1", "2"]},
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867 "0": {
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868 "1": ["0", "1"],
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869 "0": ["0"],
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870 "3": ["0", "1", "2", "3"],
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871 "2": ["0", "1", "2"],
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872 },
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873 "3": {"3": ["3"]},
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874 "2": {"3": ["2", "3"], "2": ["2"]},
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875 }
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876
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877 def test_unweighted_graph(self):
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878 with pytest.raises(nx.NetworkXError):
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879 G = nx.path_graph(5)
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880 nx.johnson(G)
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881
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882 def test_graphs(self):
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883 validate_path(self.XG, "s", "v", 9, nx.johnson(self.XG)["s"]["v"])
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884 validate_path(self.MXG, "s", "v", 9, nx.johnson(self.MXG)["s"]["v"])
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885 validate_path(self.XG2, 1, 3, 4, nx.johnson(self.XG2)[1][3])
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886 validate_path(self.XG3, 0, 3, 15, nx.johnson(self.XG3)[0][3])
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887 validate_path(self.XG4, 0, 2, 4, nx.johnson(self.XG4)[0][2])
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888 validate_path(self.MXG4, 0, 2, 4, nx.johnson(self.MXG4)[0][2])