Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/planemo/reports/build_report.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 import base64 |
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2 |
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3 from galaxy.util import strip_control_characters |
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4 from jinja2 import Environment, PackageLoader |
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5 from pkg_resources import resource_string |
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6 |
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7 TITLE = "Test Results (powered by Planemo)" |
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8 |
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9 |
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10 def build_report(structured_data, report_type="html", **kwds): |
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11 """ Use report_{report_type}.tpl to build page for report. |
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12 """ |
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13 environment = dict( |
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14 title=TITLE, |
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15 raw_data=structured_data, |
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16 ) |
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17 environment = __inject_summary(environment) |
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18 __fix_test_ids(environment) |
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19 |
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20 if report_type == 'html': |
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21 # The HTML report format needs a lot of extra, custom data. |
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22 # IMO, this seems to suggest it should be embedded. |
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23 environment['title'] = None |
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24 markdown = template_data(environment, 'report_markdown.tpl') |
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25 environment['title'] = TITLE |
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26 environment['raw_data'] = base64.b64encode(markdown.encode('utf-8')).decode('utf-8') |
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27 environment.update({ |
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28 'custom_style': __style("custom.css"), |
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29 'custom_script': __script("custom"), |
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30 'bootstrap_style': __style("bootstrap.min.css"), |
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31 'jquery_script': __script("jquery.min"), |
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32 'bootstrap_script': __script("bootstrap.min"), |
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33 'markdown_it_script': __script('markdown-it.min'), |
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34 }) |
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35 |
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36 return template_data(environment, 'report_%s.tpl' % report_type) |
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37 |
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38 |
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39 def template_data(environment, template_name, **kwds): |
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40 """Build an arbitrary templated page. |
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41 """ |
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42 env_kwargs = {} |
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43 if template_name == 'report_markdown.tpl': |
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44 env_kwargs['keep_trailing_newline'] = True |
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45 env_kwargs['trim_blocks'] = True |
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46 env = Environment(loader=PackageLoader('planemo', 'reports'), **env_kwargs) |
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47 env.filters['strip_control_characters'] = lambda x: strip_control_characters(x) if x else x |
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48 template = env.get_template(template_name) |
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49 return template.render(**environment) |
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50 |
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51 |
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52 def __fix_test_ids(environment): |
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53 for test in environment['raw_data']['tests']: |
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54 test_data = test.get('data') |
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55 if test_data and test_data.get('tool_id'): |
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56 test['id'] = "%s (Test #%s)" % (test_data['tool_id'], test_data['test_index'] + 1) |
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57 |
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58 |
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59 def __inject_summary(environment): |
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60 total = 0 |
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61 errors = 0 |
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62 failures = 0 |
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63 skips = 0 |
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64 for test in environment['raw_data']['tests']: |
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65 total += 1 |
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66 test_data = test.get('data') |
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67 if test_data: |
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68 status = test_data.get('status') |
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69 if status == 'error': |
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70 errors += 1 |
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71 elif status == 'failure': |
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72 failures += 1 |
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73 elif status == 'skipped': |
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74 skips += 1 |
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75 environment['raw_data']['results'] = { |
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76 'total': total, |
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77 'errors': errors, |
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78 'failures': failures, |
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79 'skips': skips, |
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80 } |
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81 if 'suitename' not in environment: |
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82 environment['raw_data']['suitename'] = TITLE |
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83 return environment |
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84 |
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85 |
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86 def __style(filename): |
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87 resource = __load_resource(filename) |
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88 return "<style>%s</style>" % resource |
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89 |
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90 |
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91 def __script(short_name): |
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92 resource = __load_resource("%s.js" % short_name) |
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93 return "<script>%s</script>" % resource |
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94 |
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95 |
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96 def __load_resource(name): |
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97 return resource_string( |
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98 __name__, name |
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99 ).decode('UTF-8') |