comparison env/lib/python3.9/site-packages/ephemeris/common_parser.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

0:4f3585e2f14b

#!/usr/bin/env python

import argparse


def get_common_args(login_required=True, log_file=False):

    parser = argparse.ArgumentParser(add_help=False)
    general_group = parser.add_argument_group('General options')
    general_group.add_argument("-v", "--verbose", help="Increase output verbosity.", action="store_true")
    if log_file:
        general_group.add_argument("--log_file",
                                   dest="log_file",
                                   help="Where the log file should be stored. "
                                   "Default is a file in your system's temp folder",
                                   default=None)

    con_group = parser.add_argument_group('Galaxy connection')
    con_group.add_argument("-g", "--galaxy",
                           help="Target Galaxy instance URL/IP address",
                           default="http://localhost:8080")

    if login_required:
        con_group.add_argument("-u", "--user",
                               help="Galaxy user email address")
        con_group.add_argument("-p", "--password",
                               help="Password for the Galaxy user")
        con_group.add_argument("-a", "--api_key",
                               dest="api_key",
                               help="Galaxy admin user API key (required if not defined in the tools list file)")

    return parser