diff env/lib/python3.9/site-packages/ephemeris/common_parser.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/ephemeris/common_parser.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,32 @@
+#!/usr/bin/env python
+
+import argparse
+
+
+def get_common_args(login_required=True, log_file=False):
+
+    parser = argparse.ArgumentParser(add_help=False)
+    general_group = parser.add_argument_group('General options')
+    general_group.add_argument("-v", "--verbose", help="Increase output verbosity.", action="store_true")
+    if log_file:
+        general_group.add_argument("--log_file",
+                                   dest="log_file",
+                                   help="Where the log file should be stored. "
+                                   "Default is a file in your system's temp folder",
+                                   default=None)
+
+    con_group = parser.add_argument_group('Galaxy connection')
+    con_group.add_argument("-g", "--galaxy",
+                           help="Target Galaxy instance URL/IP address",
+                           default="http://localhost:8080")
+
+    if login_required:
+        con_group.add_argument("-u", "--user",
+                               help="Galaxy user email address")
+        con_group.add_argument("-p", "--password",
+                               help="Password for the Galaxy user")
+        con_group.add_argument("-a", "--api_key",
+                               dest="api_key",
+                               help="Galaxy admin user API key (required if not defined in the tools list file)")
+
+    return parser