Mercurial > repos > shellac > sam_consensus_v3
comparison env/lib/python3.9/site-packages/galaxy/tool_util/cwl/runnable.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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-1:000000000000 | 0:4f3585e2f14b |
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1 """Lighter-weight variant of Planemo runnable outputs.""" | |
2 from galaxy.tool_util.parser import get_tool_source | |
3 from .parser import workflow_proxy | |
4 from .util import guess_artifact_type | |
5 | |
6 | |
7 def get_outputs(path): | |
8 tool_or_workflow = guess_artifact_type(path) | |
9 if tool_or_workflow == "tool": | |
10 tool_source = get_tool_source(path) | |
11 output_datasets, _ = tool_source.parse_outputs(None) | |
12 outputs = [ToolOutput(o) for o in output_datasets.values()] | |
13 return outputs | |
14 else: | |
15 workflow = workflow_proxy(path, strict_cwl_validation=False) | |
16 return [CwlWorkflowOutput(label) for label in workflow.output_labels] | |
17 | |
18 | |
19 class CwlWorkflowOutput: | |
20 | |
21 def __init__(self, label): | |
22 self._label = label | |
23 | |
24 def get_id(self): | |
25 return self._label | |
26 | |
27 | |
28 class ToolOutput: | |
29 | |
30 def __init__(self, tool_output): | |
31 self._tool_output = tool_output | |
32 | |
33 def get_id(self): | |
34 return self._tool_output.name |