diff env/lib/python3.9/site-packages/planemo/commands/cmd_shed_upload.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.9/site-packages/planemo/commands/cmd_shed_upload.py	Mon Mar 22 18:12:50 2021 +0000
@@ -0,0 +1,56 @@
+"""Module describing the planemo ``shed_upload`` command."""
+import sys
+
+import click
+
+from planemo import options
+from planemo import shed
+from planemo.cli import command_function
+
+
+tar_path = click.Path(
+    exists=True,
+    file_okay=True,
+    dir_okay=False,
+    resolve_path=True,
+)
+
+
[e-mail]("shed_upload")
[e-mail]_publish_options()
[e-mail]_upload_options()
[e-mail](
+    '--tar_only',
+    is_flag=True,
+    help="Produce tar file for upload but do not publish to a tool shed.",
+)
[e-mail](
+    '--tar',
+    help="Specify a pre-existing tar file instead of automatically building "
+         "one as part of this command.",
+    type=tar_path,
+    default=None,
+)
+@command_function
+def cli(ctx, paths, **kwds):
+    """Low-level command to upload tarballs.
+
+    Generally, ``shed_update`` should be used instead since it also updates
+    both tool shed contents (via tar ball generation and upload) as well as
+    metadata (to handle metadata changes in ``.shed.yml`` files).
+
+    \b
+        % planemo shed_upload --tar_only  ~/
+        % tar -tzf shed_upload.tar.gz
+        test-data/blastdb.loc
+        ...
+        tools/ncbi_blast_plus/tool_dependencies.xml
+        % tar -tzf shed_upload.tar.gz | wc -l
+        117
+
+    """
+    def upload(realized_repository):
+        return shed.upload_repository(ctx, realized_repository, **kwds)
+
+    exit_code = shed.for_each_repository(ctx, upload, paths, **kwds)
+    sys.exit(exit_code)