view env/lib/python3.9/site-packages/planemo/commands/cmd_shed_upload.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

"""Module describing the planemo ``shed_upload`` command."""
import sys

import click

from planemo import options
from planemo import shed
from planemo.cli import command_function


tar_path = click.Path(
    exists=True,
    file_okay=True,
    dir_okay=False,
    resolve_path=True,
)


@click.command("shed_upload")
@options.shed_publish_options()
@options.shed_upload_options()
@click.option(
    '--tar_only',
    is_flag=True,
    help="Produce tar file for upload but do not publish to a tool shed.",
)
@click.option(
    '--tar',
    help="Specify a pre-existing tar file instead of automatically building "
         "one as part of this command.",
    type=tar_path,
    default=None,
)
@command_function
def cli(ctx, paths, **kwds):
    """Low-level command to upload tarballs.

    Generally, ``shed_update`` should be used instead since it also updates
    both tool shed contents (via tar ball generation and upload) as well as
    metadata (to handle metadata changes in ``.shed.yml`` files).

    \b
        % planemo shed_upload --tar_only  ~/
        % tar -tzf shed_upload.tar.gz
        test-data/blastdb.loc
        ...
        tools/ncbi_blast_plus/tool_dependencies.xml
        % tar -tzf shed_upload.tar.gz | wc -l
        117

    """
    def upload(realized_repository):
        return shed.upload_repository(ctx, realized_repository, **kwds)

    exit_code = shed.for_each_repository(ctx, upload, paths, **kwds)
    sys.exit(exit_code)