Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/cwltool/provenance_constants.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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import hashlib import os import uuid from prov.identifier import Namespace __citation__ = "https://doi.org/10.5281/zenodo.1208477" # NOTE: Semantic versioning of the CWLProv Research Object # **and** the cwlprov files # # Rough guide (major.minor.patch): # 1. Bump major number if removing/"breaking" resources or PROV statements # 2. Bump minor number if adding resources or PROV statements # 3. Bump patch number for non-breaking non-adding changes, # e.g. fixing broken relative paths CWLPROV_VERSION = "https://w3id.org/cwl/prov/0.6.0" # Research Object folders METADATA = "metadata" DATA = "data" WORKFLOW = "workflow" SNAPSHOT = "snapshot" # sub-folders MAIN = os.path.join(WORKFLOW, "main") PROVENANCE = os.path.join(METADATA, "provenance") LOGS = os.path.join(METADATA, "logs") WFDESC = Namespace("wfdesc", "http://purl.org/wf4ever/wfdesc#") WFPROV = Namespace("wfprov", "http://purl.org/wf4ever/wfprov#") WF4EVER = Namespace("wf4ever", "http://purl.org/wf4ever/wf4ever#") RO = Namespace("ro", "http://purl.org/wf4ever/ro#") ORE = Namespace("ore", "http://www.openarchives.org/ore/terms/") FOAF = Namespace("foaf", "http://xmlns.com/foaf/0.1/") SCHEMA = Namespace("schema", "http://schema.org/") CWLPROV = Namespace("cwlprov", "https://w3id.org/cwl/prov#") ORCID = Namespace("orcid", "https://orcid.org/") UUID = Namespace("id", "urn:uuid:") # BagIt and YAML always use UTF-8 ENCODING = "UTF-8" TEXT_PLAIN = 'text/plain; charset="%s"' % ENCODING # sha1, compatible with the File type's "checksum" field # e.g. "checksum" = "sha1$47a013e660d408619d894b20806b1d5086aab03b" # See ./cwltool/schemas/v1.0/Process.yml Hasher = hashlib.sha1 SHA1 = "sha1" SHA256 = "sha256" SHA512 = "sha512" # TODO: Better identifiers for user, at least # these should be preserved in ~/.config/cwl for every execution # on this host USER_UUID = uuid.uuid4().urn ACCOUNT_UUID = uuid.uuid4().urn