Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/cwltool/tests/wf/directory.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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#!/usr/bin/env cwl-runner cwlVersion: v1.0 class: Workflow doc: > Inspect provided directory and return filenames. Generate a new directory and return it (including content). hints: - class: DockerRequirement dockerPull: debian:8 inputs: dir: type: Directory steps: ls: in: dir: dir out: [listing] run: class: CommandLineTool baseCommand: ls inputs: dir: type: Directory inputBinding: position: 1 outputs: listing: type: stdout generate: in: [] out: [dir1] run: class: CommandLineTool requirements: - class: ShellCommandRequirement arguments: - shellQuote: false valueFrom: > pwd; mkdir -p dir1/a/b; echo -n a > dir1/a.txt; echo -n b > dir1/a/b.txt; echo -n c > dir1/a/b/c.txt; inputs: [] outputs: dir1: type: Directory outputBinding: glob: "dir1" outputs: listing: type: File outputSource: ls/listing dir1: type: Directory outputSource: generate/dir1