Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/tests/wf/directory.cwl @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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1 #!/usr/bin/env cwl-runner |
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2 cwlVersion: v1.0 |
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3 class: Workflow |
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4 |
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5 doc: > |
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6 Inspect provided directory and return filenames. |
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7 Generate a new directory and return it (including content). |
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8 |
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9 hints: |
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10 - class: DockerRequirement |
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11 dockerPull: debian:8 |
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12 |
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13 inputs: |
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14 dir: |
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15 type: Directory |
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16 |
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17 steps: |
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18 ls: |
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19 in: |
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20 dir: dir |
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21 out: |
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22 [listing] |
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23 run: |
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24 class: CommandLineTool |
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25 baseCommand: ls |
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26 inputs: |
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27 dir: |
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28 type: Directory |
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29 inputBinding: |
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30 position: 1 |
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31 outputs: |
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32 listing: |
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33 type: stdout |
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34 |
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35 generate: |
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36 in: [] |
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37 out: |
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38 [dir1] |
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39 run: |
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40 class: CommandLineTool |
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41 requirements: |
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42 - class: ShellCommandRequirement |
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43 arguments: |
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44 - shellQuote: false |
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45 valueFrom: > |
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46 pwd; |
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47 mkdir -p dir1/a/b; |
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48 echo -n a > dir1/a.txt; |
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49 echo -n b > dir1/a/b.txt; |
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50 echo -n c > dir1/a/b/c.txt; |
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51 inputs: [] |
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52 outputs: |
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53 dir1: |
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54 type: Directory |
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55 outputBinding: |
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56 glob: "dir1" |
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57 |
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58 outputs: |
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59 listing: |
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60 type: File |
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61 outputSource: ls/listing |
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62 dir1: |
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63 type: Directory |
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64 outputSource: generate/dir1 |
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65 |