view env/lib/python3.9/site-packages/cwltool/tests/test_http_input.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

import os
from pathlib import Path
from typing import List

from cwltool.pathmapper import PathMapper
from cwltool.utils import CWLObjectType


def test_http_path_mapping(tmp_path: Path) -> None:

    input_file_path = "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta"
    base_file: List[CWLObjectType] = [
        {
            "class": "File",
            "location": "https://raw.githubusercontent.com/common-workflow-language/cwltool/main/tests/2.fasta",
            "basename": "chr20.fa",
        }
    ]
    pathmap = PathMapper(base_file, os.getcwd(), str(tmp_path))._pathmap

    assert input_file_path in pathmap
    assert os.path.exists(pathmap[input_file_path].resolved)

    with open(pathmap[input_file_path].resolved) as file:
        contents = file.read()

    assert ">Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;" in contents