Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/networkx/algorithms/components/weakly_connected.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"""Weakly connected components.""" import networkx as nx from networkx.utils.decorators import not_implemented_for __all__ = [ "number_weakly_connected_components", "weakly_connected_components", "is_weakly_connected", ] @not_implemented_for("undirected") def weakly_connected_components(G): """Generate weakly connected components of G. Parameters ---------- G : NetworkX graph A directed graph Returns ------- comp : generator of sets A generator of sets of nodes, one for each weakly connected component of G. Raises ------ NetworkXNotImplemented If G is undirected. Examples -------- Generate a sorted list of weakly connected components, largest first. >>> G = nx.path_graph(4, create_using=nx.DiGraph()) >>> nx.add_path(G, [10, 11, 12]) >>> [ ... len(c) ... for c in sorted(nx.weakly_connected_components(G), key=len, reverse=True) ... ] [4, 3] If you only want the largest component, it's more efficient to use max instead of sort: >>> largest_cc = max(nx.weakly_connected_components(G), key=len) See Also -------- connected_components strongly_connected_components Notes ----- For directed graphs only. """ seen = set() for v in G: if v not in seen: c = set(_plain_bfs(G, v)) yield c seen.update(c) @not_implemented_for("undirected") def number_weakly_connected_components(G): """Returns the number of weakly connected components in G. Parameters ---------- G : NetworkX graph A directed graph. Returns ------- n : integer Number of weakly connected components Raises ------ NetworkXNotImplemented If G is undirected. See Also -------- weakly_connected_components number_connected_components number_strongly_connected_components Notes ----- For directed graphs only. """ return sum(1 for wcc in weakly_connected_components(G)) @not_implemented_for("undirected") def is_weakly_connected(G): """Test directed graph for weak connectivity. A directed graph is weakly connected if and only if the graph is connected when the direction of the edge between nodes is ignored. Note that if a graph is strongly connected (i.e. the graph is connected even when we account for directionality), it is by definition weakly connected as well. Parameters ---------- G : NetworkX Graph A directed graph. Returns ------- connected : bool True if the graph is weakly connected, False otherwise. Raises ------ NetworkXNotImplemented If G is undirected. See Also -------- is_strongly_connected is_semiconnected is_connected is_biconnected weakly_connected_components Notes ----- For directed graphs only. """ if len(G) == 0: raise nx.NetworkXPointlessConcept( """Connectivity is undefined for the null graph.""" ) return len(list(weakly_connected_components(G))[0]) == len(G) def _plain_bfs(G, source): """A fast BFS node generator The direction of the edge between nodes is ignored. For directed graphs only. """ Gsucc = G.succ Gpred = G.pred seen = set() nextlevel = {source} while nextlevel: thislevel = nextlevel nextlevel = set() for v in thislevel: if v not in seen: yield v seen.add(v) nextlevel.update(Gsucc[v]) nextlevel.update(Gpred[v])