## Mercurial > repos > shellac > sam_consensus_v3

### view env/lib/python3.9/site-packages/networkx/algorithms/euler.py @ 0:4f3585e2f14b draft default tip

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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |

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""" Eulerian circuits and graphs. """ from itertools import combinations import networkx as nx from ..utils import arbitrary_element, not_implemented_for __all__ = [ "is_eulerian", "eulerian_circuit", "eulerize", "is_semieulerian", "has_eulerian_path", "eulerian_path", ] def is_eulerian(G): """Returns True if and only if `G` is Eulerian. A graph is *Eulerian* if it has an Eulerian circuit. An *Eulerian circuit* is a closed walk that includes each edge of a graph exactly once. Parameters ---------- G : NetworkX graph A graph, either directed or undirected. Examples -------- >>> nx.is_eulerian(nx.DiGraph({0: [3], 1: [2], 2: [3], 3: [0, 1]})) True >>> nx.is_eulerian(nx.complete_graph(5)) True >>> nx.is_eulerian(nx.petersen_graph()) False Notes ----- If the graph is not connected (or not strongly connected, for directed graphs), this function returns False. """ if G.is_directed(): # Every node must have equal in degree and out degree and the # graph must be strongly connected return all( G.in_degree(n) == G.out_degree(n) for n in G ) and nx.is_strongly_connected(G) # An undirected Eulerian graph has no vertices of odd degree and # must be connected. return all(d % 2 == 0 for v, d in G.degree()) and nx.is_connected(G) def is_semieulerian(G): """Return True iff `G` is semi-Eulerian. G is semi-Eulerian if it has an Eulerian path but no Eulerian circuit. """ return has_eulerian_path(G) and not is_eulerian(G) def _find_path_start(G): """Return a suitable starting vertex for an Eulerian path. If no path exists, return None. """ if not has_eulerian_path(G): return None if is_eulerian(G): return arbitrary_element(G) if G.is_directed(): v1, v2 = [v for v in G if G.in_degree(v) != G.out_degree(v)] # Determines which is the 'start' node (as opposed to the 'end') if G.out_degree(v1) > G.in_degree(v1): return v1 else: return v2 else: # In an undirected graph randomly choose one of the possibilities start = [v for v in G if G.degree(v) % 2 != 0][0] return start def _simplegraph_eulerian_circuit(G, source): if G.is_directed(): degree = G.out_degree edges = G.out_edges else: degree = G.degree edges = G.edges vertex_stack = [source] last_vertex = None while vertex_stack: current_vertex = vertex_stack[-1] if degree(current_vertex) == 0: if last_vertex is not None: yield (last_vertex, current_vertex) last_vertex = current_vertex vertex_stack.pop() else: _, next_vertex = arbitrary_element(edges(current_vertex)) vertex_stack.append(next_vertex) G.remove_edge(current_vertex, next_vertex) def _multigraph_eulerian_circuit(G, source): if G.is_directed(): degree = G.out_degree edges = G.out_edges else: degree = G.degree edges = G.edges vertex_stack = [(source, None)] last_vertex = None last_key = None while vertex_stack: current_vertex, current_key = vertex_stack[-1] if degree(current_vertex) == 0: if last_vertex is not None: yield (last_vertex, current_vertex, last_key) last_vertex, last_key = current_vertex, current_key vertex_stack.pop() else: triple = arbitrary_element(edges(current_vertex, keys=True)) _, next_vertex, next_key = triple vertex_stack.append((next_vertex, next_key)) G.remove_edge(current_vertex, next_vertex, next_key) def eulerian_circuit(G, source=None, keys=False): """Returns an iterator over the edges of an Eulerian circuit in `G`. An *Eulerian circuit* is a closed walk that includes each edge of a graph exactly once. Parameters ---------- G : NetworkX graph A graph, either directed or undirected. source : node, optional Starting node for circuit. keys : bool If False, edges generated by this function will be of the form ``(u, v)``. Otherwise, edges will be of the form ``(u, v, k)``. This option is ignored unless `G` is a multigraph. Returns ------- edges : iterator An iterator over edges in the Eulerian circuit. Raises ------ NetworkXError If the graph is not Eulerian. See Also -------- is_eulerian Notes ----- This is a linear time implementation of an algorithm adapted from [1]_. For general information about Euler tours, see [2]_. References ---------- .. [1] J. Edmonds, E. L. Johnson. Matching, Euler tours and the Chinese postman. Mathematical programming, Volume 5, Issue 1 (1973), 111-114. .. [2] https://en.wikipedia.org/wiki/Eulerian_path Examples -------- To get an Eulerian circuit in an undirected graph:: >>> G = nx.complete_graph(3) >>> list(nx.eulerian_circuit(G)) [(0, 2), (2, 1), (1, 0)] >>> list(nx.eulerian_circuit(G, source=1)) [(1, 2), (2, 0), (0, 1)] To get the sequence of vertices in an Eulerian circuit:: >>> [u for u, v in nx.eulerian_circuit(G)] [0, 2, 1] """ if not is_eulerian(G): raise nx.NetworkXError("G is not Eulerian.") if G.is_directed(): G = G.reverse() else: G = G.copy() if source is None: source = arbitrary_element(G) if G.is_multigraph(): for u, v, k in _multigraph_eulerian_circuit(G, source): if keys: yield u, v, k else: yield u, v else: yield from _simplegraph_eulerian_circuit(G, source) def has_eulerian_path(G): """Return True iff `G` has an Eulerian path. An Eulerian path is a path in a graph which uses each edge of a graph exactly once. A directed graph has an Eulerian path iff: - at most one vertex has out_degree - in_degree = 1, - at most one vertex has in_degree - out_degree = 1, - every other vertex has equal in_degree and out_degree, - and all of its vertices with nonzero degree belong to a - single connected component of the underlying undirected graph. An undirected graph has an Eulerian path iff: - exactly zero or two vertices have odd degree, - and all of its vertices with nonzero degree belong to a - single connected component. Parameters ---------- G : NetworkX Graph The graph to find an euler path in. Returns ------- Bool : True if G has an eulerian path. See Also -------- is_eulerian eulerian_path """ if G.is_directed(): ins = G.in_degree outs = G.out_degree semibalanced_ins = sum(ins(v) - outs(v) == 1 for v in G) semibalanced_outs = sum(outs(v) - ins(v) == 1 for v in G) return ( semibalanced_ins <= 1 and semibalanced_outs <= 1 and sum(G.in_degree(v) != G.out_degree(v) for v in G) <= 2 and nx.is_weakly_connected(G) ) else: return sum(d % 2 == 1 for v, d in G.degree()) in (0, 2) and nx.is_connected(G) def eulerian_path(G, source=None, keys=False): """Return an iterator over the edges of an Eulerian path in `G`. Parameters ---------- G : NetworkX Graph The graph in which to look for an eulerian path. source : node or None (default: None) The node at which to start the search. None means search over all starting nodes. keys : Bool (default: False) Indicates whether to yield edge 3-tuples (u, v, edge_key). The default yields edge 2-tuples Yields ------ Edge tuples along the eulerian path. Warning: If `source` provided is not the start node of an Euler path will raise error even if an Euler Path exists. """ if not has_eulerian_path(G): raise nx.NetworkXError("Graph has no Eulerian paths.") if G.is_directed(): G = G.reverse() else: G = G.copy() if source is None: source = _find_path_start(G) if G.is_multigraph(): for u, v, k in _multigraph_eulerian_circuit(G, source): if keys: yield u, v, k else: yield u, v else: yield from _simplegraph_eulerian_circuit(G, source) @not_implemented_for("directed") def eulerize(G): """Transforms a graph into an Eulerian graph Parameters ---------- G : NetworkX graph An undirected graph Returns ------- G : NetworkX multigraph Raises ------ NetworkXError If the graph is not connected. See Also -------- is_eulerian eulerian_circuit References ---------- .. [1] J. Edmonds, E. L. Johnson. Matching, Euler tours and the Chinese postman. Mathematical programming, Volume 5, Issue 1 (1973), 111-114. [2] https://en.wikipedia.org/wiki/Eulerian_path .. [3] http://web.math.princeton.edu/math_alive/5/Notes1.pdf Examples -------- >>> G = nx.complete_graph(10) >>> H = nx.eulerize(G) >>> nx.is_eulerian(H) True """ if G.order() == 0: raise nx.NetworkXPointlessConcept("Cannot Eulerize null graph") if not nx.is_connected(G): raise nx.NetworkXError("G is not connected") odd_degree_nodes = [n for n, d in G.degree() if d % 2 == 1] G = nx.MultiGraph(G) if len(odd_degree_nodes) == 0: return G # get all shortest paths between vertices of odd degree odd_deg_pairs_paths = [ (m, {n: nx.shortest_path(G, source=m, target=n)}) for m, n in combinations(odd_degree_nodes, 2) ] # use inverse path lengths as edge-weights in a new graph # store the paths in the graph for easy indexing later Gp = nx.Graph() for n, Ps in odd_deg_pairs_paths: for m, P in Ps.items(): if n != m: Gp.add_edge(m, n, weight=1 / len(P), path=P) # find the minimum weight matching of edges in the weighted graph best_matching = nx.Graph(list(nx.max_weight_matching(Gp))) # duplicate each edge along each path in the set of paths in Gp for m, n in best_matching.edges(): path = Gp[m][n]["path"] G.add_edges_from(nx.utils.pairwise(path)) return G