view env/lib/python3.9/site-packages/networkx/readwrite/json_graph/tests/test_cytoscape.py @ 0:4f3585e2f14b draft default tip

"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"

import json
import pytest
import networkx as nx
from networkx.readwrite.json_graph import cytoscape_data, cytoscape_graph


class TestCytoscape:
    def test_graph(self):
        G = nx.path_graph(4)
        H = cytoscape_graph(cytoscape_data(G))
        nx.is_isomorphic(G, H)

    def test_graph_attributes(self):
        G = nx.path_graph(4)
        G.add_node(1, color="red")
        G.add_edge(1, 2, width=7)
        G.graph["foo"] = "bar"
        G.graph[1] = "one"
        G.add_node(3, name="node", id="123")

        H = cytoscape_graph(cytoscape_data(G))
        assert H.graph["foo"] == "bar"
        assert H.nodes[1]["color"] == "red"
        assert H[1][2]["width"] == 7
        assert H.nodes[3]["name"] == "node"
        assert H.nodes[3]["id"] == "123"

        d = json.dumps(cytoscape_data(G))
        H = cytoscape_graph(json.loads(d))
        assert H.graph["foo"] == "bar"
        assert H.graph[1] == "one"
        assert H.nodes[1]["color"] == "red"
        assert H[1][2]["width"] == 7
        assert H.nodes[3]["name"] == "node"
        assert H.nodes[3]["id"] == "123"

    def test_digraph(self):
        G = nx.DiGraph()
        nx.add_path(G, [1, 2, 3])
        H = cytoscape_graph(cytoscape_data(G))
        assert H.is_directed()
        nx.is_isomorphic(G, H)

    def test_multidigraph(self):
        G = nx.MultiDiGraph()
        nx.add_path(G, [1, 2, 3])
        H = cytoscape_graph(cytoscape_data(G))
        assert H.is_directed()
        assert H.is_multigraph()

    def test_multigraph(self):
        G = nx.MultiGraph()
        G.add_edge(1, 2, key="first")
        G.add_edge(1, 2, key="second", color="blue")
        H = cytoscape_graph(cytoscape_data(G))
        assert nx.is_isomorphic(G, H)
        assert H[1][2]["second"]["color"] == "blue"

    def test_exception(self):
        with pytest.raises(nx.NetworkXError):
            G = nx.MultiDiGraph()
            attrs = dict(name="node", ident="node")
            cytoscape_data(G, attrs)