Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/planemo/commands/cmd_shed_lint.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"""Module describing the planemo ``shed_lint`` command.""" import click from planemo import options from planemo import shed from planemo import shed_lint from planemo.cli import command_function @click.command('shed_lint') @options.shed_realization_options() @options.report_level_option() @options.fail_level_option() @options.click.option( '--tools', is_flag=True, default=False, help=("Lint tools discovered in the process of linting repositories.") ) @options.lint_xsd_option() @options.click.option( '--ensure_metadata', is_flag=True, default=False, help=("Ensure .shed.yml files contain enough metadata for each repository " "to allow automated creation and/or updates.") ) @click.option( "--urls", is_flag=True, default=False, help="Check validity of URLs in XML files", ) # @click.option( # "--verify", # is_flag=True, # help="If an sha256sum is available, download the entire file AND validate it.", # default=False, # ) @command_function def cli(ctx, paths, **kwds): """Check Tool Shed repository for common issues. With the ``--tools`` flag, this command lints actual Galaxy tools in addition to tool shed artifacts. With the ``--urls`` flag, this command searches for ``<package>$URL</package>`` and download actions which specify URLs. Each of those are accessed individually. By default, this tool requests the first hundred or so bytes of each listed URL and validates that a 200 OK was received. In tool XML files, the ``--urls`` option checks through the help text for mentioned URLs and checks those. """ def lint(realized_repository): return shed_lint.lint_repository(ctx, realized_repository, **kwds) kwds["fail_on_missing"] = False exit_code = shed.for_each_repository(ctx, lint, paths, **kwds) ctx.exit(exit_code)