Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/planemo/commands/cmd_shed_serve.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"""Module describing the planemo ``shed_serve`` command.""" import click from planemo import io from planemo import options from planemo import shed from planemo.cli import command_function from planemo.galaxy import shed_serve from planemo.galaxy.serve import sleep_for_serve @click.command("shed_serve") @options.shed_read_options() @options.galaxy_serve_options() @click.option( "--skip_dependencies", is_flag=True, help="Do not install shed dependencies as part of repository installation." ) @command_function def cli(ctx, paths, **kwds): """Launch Galaxy with Tool Shed dependencies. This command will start a Galaxy instance configured to target the specified shed, find published artifacts (tools and dependencies) corresponding to command-line arguments and ``.shed.yml`` file(s), install these artifacts, and serve a Galaxy instances that can be logged into and explored interactively. """ kwds['galaxy_skip_client_build'] = kwds.pop("skip_client_build", False) install_args_list = shed.install_arg_lists(ctx, paths, **kwds) with shed_serve(ctx, install_args_list, **kwds) as config: io.info("Galaxy running with tools installed at %s" % config.galaxy_url) sleep_for_serve()