Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/planemo/commands/cmd_workflow_edit.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"""Module describing the planemo ``workflow_edit`` command.""" import click from planemo import options from planemo.cli import command_function from planemo.engine import ( engine_context, is_galaxy_engine, ) from planemo.galaxy.serve import sleep_for_serve from planemo.runnable_resolve import for_runnable_identifier @click.command('workflow_edit') @options.required_workflow_arg() @options.galaxy_serve_options() @command_function def cli(ctx, workflow_identifier, output=None, force=False, **kwds): """Open a synchronized Galaxy workflow editor. """ assert is_galaxy_engine(**kwds) runnable = for_runnable_identifier(ctx, workflow_identifier, kwds.get("profile")) kwds["workflows_from_path"] = True with engine_context(ctx, **kwds) as galaxy_engine: with galaxy_engine.ensure_runnables_served([runnable]) as config: workflow_id = config.workflow_id_for_runnable(runnable) url = "%s/workflow/editor?id=%s" % (config.galaxy_url, workflow_id) click.launch(url) if kwds["engine"] != "external_galaxy": sleep_for_serve()