Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/planemo/linters/conda_requirements.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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"""Ensure requirements are matched in best practice conda channels.""" from planemo.conda import ( BEST_PRACTICE_CHANNELS, best_practice_search, tool_source_conda_targets, ) lint_tool_types = ["*"] def lint_requirements_in_conda(tool_source, lint_ctx): """Check requirements of tool source against best practice Conda channels.""" conda_targets = tool_source_conda_targets(tool_source) if not conda_targets: lint_ctx.warn("No valid package requirement tags found to check against Conda.") return for conda_target in conda_targets: (best_hit, exact) = best_practice_search(conda_target) conda_target_str = conda_target.package if conda_target.version: conda_target_str += "@%s" % (conda_target.version) if best_hit and exact: template = "Requirement [%s] matches target in best practice Conda channel [%s]." message = template % (conda_target_str, best_hit.get("channel")) lint_ctx.info(message) elif best_hit: template = "Requirement [%s] doesn't exactly match available version [%s] in best practice Conda channel [%s]." message = template % (conda_target_str, best_hit['version'], best_hit.get("channel")) lint_ctx.warn(message) else: template = "Requirement [%s] doesn't match any recipe in a best practice conda channel [%s]." message = template % (conda_target_str, BEST_PRACTICE_CHANNELS) lint_ctx.warn(message)