Mercurial > repos > shellac > sam_consensus_v3
view env/lib/python3.9/site-packages/prov/tests/examples.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
| author | shellac |
|---|---|
| date | Mon, 22 Mar 2021 18:12:50 +0000 |
| parents | |
| children |
line wrap: on
line source
# coding: utf8 from __future__ import (absolute_import, division, print_function, unicode_literals) from prov.model import ProvDocument, Namespace, Literal, PROV, Identifier import datetime def primer_example(): # https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/primer.pn #=========================================================================== # document g = ProvDocument() # prefix ex <http://example/> # prefix dcterms <http://purl.org/dc/terms/> # prefix foaf <http://xmlns.com/foaf/0.1/> ex = Namespace('ex', 'http://example/') # namespaces do not need to be explicitly added to a document g.add_namespace("dcterms", "http://purl.org/dc/terms/") g.add_namespace("foaf", "http://xmlns.com/foaf/0.1/") # entity(ex:article, [dcterms:title="Crime rises in cities"]) # first time the ex namespace was used, it is added to the document automatically g.entity(ex['article'], {'dcterms:title': "Crime rises in cities"}) # entity(ex:articleV1) g.entity(ex['articleV1']) # entity(ex:articleV2) g.entity(ex['articleV2']) # entity(ex:dataSet1) g.entity(ex['dataSet1']) # entity(ex:dataSet2) g.entity(ex['dataSet2']) # entity(ex:regionList) g.entity(ex['regionList']) # entity(ex:composition) g.entity(ex['composition']) # entity(ex:chart1) g.entity(ex['chart1']) # entity(ex:chart2) g.entity(ex['chart2']) # entity(ex:blogEntry) g.entity(ex['blogEntry']) # activity(ex:compile) g.activity('ex:compile') # since ex is registered, it can be used like this # activity(ex:compile2) g.activity('ex:compile2') # activity(ex:compose) g.activity('ex:compose') # activity(ex:correct, 2012-03-31T09:21:00, 2012-04-01T15:21:00) g.activity('ex:correct', '2012-03-31T09:21:00', '2012-04-01T15:21:00') # date time can be provided as strings # activity(ex:illustrate) g.activity('ex:illustrate') # used(ex:compose, ex:dataSet1, -, [ prov:role = "ex:dataToCompose"]) g.used('ex:compose', 'ex:dataSet1', other_attributes={'prov:role': "ex:dataToCompose"}) # used(ex:compose, ex:regionList, -, [ prov:role = "ex:regionsToAggregateBy"]) g.used('ex:compose', 'ex:regionList', other_attributes={'prov:role': "ex:regionsToAggregateBy"}) # wasGeneratedBy(ex:composition, ex:compose, -) g.wasGeneratedBy('ex:composition', 'ex:compose') # used(ex:illustrate, ex:composition, -) g.used('ex:illustrate', 'ex:composition') # wasGeneratedBy(ex:chart1, ex:illustrate, -) g.wasGeneratedBy('ex:chart1', 'ex:illustrate') # wasGeneratedBy(ex:chart1, ex:compile, 2012-03-02T10:30:00) g.wasGeneratedBy('ex:chart1', 'ex:compile', '2012-03-02T10:30:00') # wasGeneratedBy(ex:chart2, ex:compile2, 2012-04-01T15:21:00) # # # agent(ex:derek, [ prov:type="prov:Person", foaf:givenName = "Derek", # foaf:mbox= "<mailto:derek@example.org>"]) g.agent('ex:derek', { 'prov:type': PROV["Person"], 'foaf:givenName': "Derek", 'foaf:mbox': "<mailto:derek@example.org>" }) # wasAssociatedWith(ex:compose, ex:derek, -) g.wasAssociatedWith('ex:compose', 'ex:derek') # wasAssociatedWith(ex:illustrate, ex:derek, -) g.wasAssociatedWith('ex:illustrate', 'ex:derek') # # agent(ex:chartgen, [ prov:type="prov:Organization", # foaf:name = "Chart Generators Inc"]) g.agent('ex:chartgen', {'prov:type': PROV["Organization"], 'foaf:name': "Chart Generators Inc"}) # actedOnBehalfOf(ex:derek, ex:chartgen, ex:compose) g.actedOnBehalfOf('ex:derek', 'ex:chartgen', 'ex:compose') # wasAttributedTo(ex:chart1, ex:derek) g.wasAttributedTo('ex:chart1', 'ex:derek') # wasGeneratedBy(ex:dataSet2, ex:correct, -) g.wasGeneratedBy('ex:dataSet2', 'ex:correct') # used(ex:correct, ex:dataSet1, -) g.used('ex:correct', 'ex:dataSet1') # wasDerivedFrom(ex:dataSet2, ex:dataSet1, [prov:type='prov:Revision']) g.wasDerivedFrom('ex:dataSet2', 'ex:dataSet1', other_attributes={'prov:type': PROV['Revision']}) # wasDerivedFrom(ex:chart2, ex:dataSet2) g.wasDerivedFrom('ex:chart2', 'ex:dataSet2') # wasDerivedFrom(ex:blogEntry, ex:article, [prov:type='prov:Quotation']) g.wasDerivedFrom('ex:blogEntry', 'ex:article', other_attributes={'prov:type': PROV['Quotation']}) # specializationOf(ex:articleV1, ex:article) g.specializationOf('ex:articleV1', 'ex:article') # wasDerivedFrom(ex:articleV1, ex:dataSet1) g.wasDerivedFrom('ex:articleV1', 'ex:dataSet1') # specializationOf(ex:articleV2, ex:article) g.specializationOf('ex:articleV2', 'ex:article') # wasDerivedFrom(ex:articleV2, ex:dataSet2) g.wasDerivedFrom('ex:articleV2', 'ex:dataSet2') # alternateOf(ex:articleV2, ex:articleV1) g.alternateOf('ex:articleV2', 'ex:articleV1') # endDocument return g def primer_example_alternate(): g = ProvDocument(namespaces={ 'ex': 'http://example/', 'dcterms': 'http://purl.org/dc/terms/', 'foaf': 'http://xmlns.com/foaf/0.1/' }) article = g.entity('ex:article', {'dcterms:title': "Crime rises in cities"}) articleV1 = g.entity('ex:articleV1') articleV2 = g.entity('ex:articleV2') dataSet1 = g.entity('ex:dataSet1') dataSet2 = g.entity('ex:dataSet2') regionList = g.entity('ex:regionList') composition = g.entity('ex:composition') chart1 = g.entity('ex:chart1') chart2 = g.entity('ex:chart2') blogEntry = g.entity('ex:blogEntry') compile = g.activity('ex:compile') compile2 = g.activity('ex:compile2') compose = g.activity('ex:compose') correct = g.activity('ex:correct', '2012-03-31T09:21:00', '2012-04-01T15:21:00') illustrate = g.activity('ex:illustrate') compose.used(dataSet1, attributes={'prov:role': "ex:dataToCompose"}) compose.used(regionList, attributes={'prov:role': "ex:regionsToAggregateBy"}) composition.wasGeneratedBy(compose) illustrate.used(composition) chart1.wasGeneratedBy(illustrate) chart1.wasGeneratedBy(compile, '2012-03-02T10:30:00') derek = g.agent('ex:derek', { 'prov:type': PROV['Person'], 'foaf:givenName': "Derek", 'foaf:mbox': "<mailto:derek@example.org>" }) compose.wasAssociatedWith(derek) illustrate.wasAssociatedWith(derek) chartgen = g.agent('ex:chartgen', { 'prov:type': PROV["Organization"], 'foaf:name': "Chart Generators Inc" }) derek.actedOnBehalfOf(chartgen, compose) chart1.wasAttributedTo(derek) dataSet2.wasGeneratedBy(correct) correct.used(dataSet1) dataSet2.wasDerivedFrom(dataSet1, attributes={'prov:type': PROV['Revision']}) chart2.wasDerivedFrom(dataSet2) blogEntry.wasDerivedFrom(article, attributes={'prov:type': PROV['Quotation']}) articleV1.specializationOf(article) articleV1.wasDerivedFrom(dataSet1) articleV2.specializationOf(article) articleV2.wasDerivedFrom(dataSet2) articleV2.alternateOf(articleV1) return g def w3c_publication_1(): # https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication1.prov-asn #=========================================================================== # bundle # # prefix ex <http://example.org/> # # prefix w3 <http://www.w3.org/> # prefix tr <http://www.w3.org/TR/2011/> # prefix process <http://www.w3.org/2005/10/Process-20051014/tr.html#> # prefix email <https://lists.w3.org/Archives/Member/w3c-archive/> # prefix chairs <https://lists.w3.org/Archives/Member/chairs/> # prefix trans <http://www.w3.org/2005/08/01-transitions.html#> # prefix rec54 <http://www.w3.org/2001/02pd/rec54#> # # # entity(tr:WD-prov-dm-20111018, [ prov:type='rec54:WD' ]) # entity(tr:WD-prov-dm-20111215, [ prov:type='rec54:WD' ]) # entity(process:rec-advance, [ prov:type='prov:Plan' ]) # # # entity(chairs:2011OctDec/0004, [ prov:type='trans:transreq' ]) # entity(email:2011Oct/0141, [ prov:type='trans:pubreq' ]) # entity(email:2011Dec/0111, [ prov:type='trans:pubreq' ]) # # # wasDerivedFrom(tr:WD-prov-dm-20111215, tr:WD-prov-dm-20111018) # # # activity(ex:act1,-,-,[prov:type="publish"]) # activity(ex:act2,-,-,[prov:type="publish"]) # # wasGeneratedBy(tr:WD-prov-dm-20111018, ex:act1, -) # wasGeneratedBy(tr:WD-prov-dm-20111215, ex:act2, -) # # used(ex:act1, chairs:2011OctDec/0004, -) # used(ex:act1, email:2011Oct/0141, -) # used(ex:act2, email:2011Dec/0111, -) # # agent(w3:Consortium, [ prov:type='prov:Organization' ]) # # wasAssociatedWith(ex:act1, w3:Consortium, process:rec-advance) # wasAssociatedWith(ex:act2, w3:Consortium, process:rec-advance) # # endBundle #=========================================================================== g = ProvDocument() g.add_namespace('ex', 'http://example.org/') g.add_namespace('w3', 'http://www.w3.org/') g.add_namespace('tr', 'http://www.w3.org/TR/2011/') g.add_namespace('process', 'http://www.w3.org/2005/10/Process-20051014/tr.html#') g.add_namespace('email', 'https://lists.w3.org/Archives/Member/w3c-archive/') g.add_namespace('chairs', 'https://lists.w3.org/Archives/Member/chairs/') g.add_namespace('trans', 'http://www.w3.org/2005/08/01-transitions.html#') g.add_namespace('rec54', 'http://www.w3.org/2001/02pd/rec54#') g.entity('tr:WD-prov-dm-20111018', {'prov:type': 'rec54:WD'}) g.entity('tr:WD-prov-dm-20111215', {'prov:type': 'rec54:WD'}) g.entity('process:rec-advance', {'prov:type': 'prov:Plan'}) g.entity('chairs:2011OctDec/0004', {'prov:type': 'trans:transreq'}) g.entity('email:2011Oct/0141', {'prov:type': 'trans:pubreq'}) g.entity('email:2011Dec/0111', {'prov:type': 'trans:pubreq'}) g.wasDerivedFrom('tr:WD-prov-dm-20111215', 'tr:WD-prov-dm-20111018') g.activity('ex:act1', other_attributes={'prov:type': "publish"}) g.activity('ex:act2', other_attributes={'prov:type': "publish"}) g.wasGeneratedBy('tr:WD-prov-dm-20111018', 'ex:act1') g.wasGeneratedBy('tr:WD-prov-dm-20111215', 'ex:act2') g.used('ex:act1', 'chairs:2011OctDec/0004') g.used('ex:act1', 'email:2011Oct/0141') g.used('ex:act2', 'email:2011Dec/0111') g.agent('w3:Consortium', other_attributes={'prov:type': "Organization"}) g.wasAssociatedWith('ex:act1', 'w3:Consortium', 'process:rec-advance') g.wasAssociatedWith('ex:act2', 'w3:Consortium', 'process:rec-advance') return g def w3c_publication_2(): # https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication2.prov-asn #=========================================================================== # bundle # # prefix ex <http://example.org/> # prefix rec <http://example.org/record> # # prefix w3 <http://www.w3.org/TR/2011/> # prefix hg <http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/> # # # entity(hg:Overview.html, [ prov:type="file in hg" ]) # entity(w3:WD-prov-dm-20111215, [ prov:type="html4" ]) # # # activity(ex:rcp,-,-,[prov:type="copy directory"]) # # wasGeneratedBy(rec:g; w3:WD-prov-dm-20111215, ex:rcp, -) # # entity(ex:req3, [ prov:type="http://www.w3.org/2005/08/01-transitions.html#pubreq" %% xsd:anyURI ]) # # used(rec:u; ex:rcp,hg:Overview.html,-) # used(ex:rcp, ex:req3, -) # # # wasDerivedFrom(w3:WD-prov-dm-20111215, hg:Overview.html, ex:rcp, rec:g, rec:u) # # agent(ex:webmaster, [ prov:type='prov:Person' ]) # # wasAssociatedWith(ex:rcp, ex:webmaster, -) # # endBundle #=========================================================================== ex = Namespace('ex', 'http://example.org/') rec = Namespace('rec', 'http://example.org/record') w3 = Namespace('w3', 'http://www.w3.org/TR/2011/') hg = Namespace('hg', 'http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/') g = ProvDocument() g.entity(hg['Overview.html'], {'prov:type': "file in hg"}) g.entity(w3['WD-prov-dm-20111215'], {'prov:type': "html4"}) g.activity(ex['rcp'], None, None, {'prov:type': "copy directory"}) g.wasGeneratedBy('w3:WD-prov-dm-20111215', 'ex:rcp', identifier=rec['g']) g.entity('ex:req3', {'prov:type': Identifier("http://www.w3.org/2005/08/01-transitions.html#pubreq")}) g.used('ex:rcp', 'hg:Overview.html', identifier='rec:u') g.used('ex:rcp', 'ex:req3') g.wasDerivedFrom('w3:WD-prov-dm-20111215', 'hg:Overview.html', 'ex:rcp', 'rec:g', 'rec:u') g.agent('ex:webmaster', {'prov:type': "Person"}) g.wasAssociatedWith('ex:rcp', 'ex:webmaster') return g def bundles1(): # https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/bundles1.provn #=============================================================================== # document g = ProvDocument() # prefix ex <http://example.org/example/> EX = Namespace("ex", "http://www.example.com/") g.add_namespace(EX) # prefix alice <http://example.org/alice/> # prefix bob <http://example.org/bob/> g.add_namespace('alice', 'http://example.org/alice/') g.add_namespace('bob', 'http://example.org/bob/') # entity(bob:bundle1, [prov:type='prov:Bundle']) g.entity('bob:bundle1', {'prov:type': PROV['Bundle']}) # wasGeneratedBy(bob:bundle1, -, 2012-05-24T10:30:00) g.wasGeneratedBy('bob:bundle1', time='2012-05-24T10:30:00') # agent(ex:Bob) g.agent('ex:Bob') # wasAttributedTo(bob:bundle1, ex:Bob) g.wasAttributedTo('bob:bundle1', 'ex:Bob') # entity(alice:bundle2, [ prov:type='prov:Bundle' ]) g.entity('alice:bundle2', {'prov:type': PROV['Bundle']}) # wasGeneratedBy(alice:bundle2, -, 2012-05-25T11:15:00) g.wasGeneratedBy('alice:bundle2', time='2012-05-25T11:15:00') # agent(ex:Alice) g.agent('ex:Alice') # wasAttributedTo(alice:bundle2, ex:Alice) g.wasAttributedTo('alice:bundle2', 'ex:Alice') # bundle bob:bundle1 b1 = g.bundle('bob:bundle1') # entity(ex:report1, [ prov:type="report", ex:version=1 ]) b1.entity('ex:report1', {'prov:type': "report", 'ex:version': 1}) # wasGeneratedBy(ex:report1, -, 2012-05-24T10:00:01) b1.wasGeneratedBy('ex:report1', time='2012-05-24T10:00:01') # endBundle # bundle alice:bundle2 b2 = g.bundle('alice:bundle2') # entity(ex:report1) b2.entity('ex:report1') # entity(ex:report2, [ prov:type="report", ex:version=2 ]) b2.entity('ex:report2', {'prov:type': "report", 'ex:version': 2}) # wasGeneratedBy(ex:report2, -, 2012-05-25T11:00:01) b2.wasGeneratedBy('ex:report2', time='2012-05-25T11:00:01') # wasDerivedFrom(ex:report2, ex:report1) b2.wasDerivedFrom('ex:report2', 'ex:report1') # endBundle # endDocument return g def bundles2(): # https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/bundles2.provn #=========================================================================== # document g = ProvDocument() # prefix ex <http://example.org/example/> g.add_namespace("ex", "http://www.example.com/") # prefix alice <http://example.org/alice/> # prefix bob <http://example.org/bob/> g.add_namespace('alice', 'http://example.org/alice/') g.add_namespace('bob', 'http://example.org/bob/') # entity(bob:bundle4, [prov:type='prov:Bundle']) # wasGeneratedBy(bob:bundle4, -, 2012-05-24T10:30:00) # agent(ex:Bob) # wasAttributedTo(bob:bundle4, ex:Bob) g.entity('bob:bundle4', {'prov:type': PROV['Bundle']}) g.wasGeneratedBy('bob:bundle4', time='2012-05-24T10:30:00') g.agent('ex:Bob') g.wasAttributedTo('bob:bundle4', 'ex:Bob') # entity(alice:bundle5, [ prov:type='prov:Bundle' ]) # wasGeneratedBy(alice:bundle5, -, 2012-05-25T11:15:00) # agent(ex:Alice) # wasAttributedTo(alice:bundle5, ex:Alice) g.entity('alice:bundle5', {'prov:type': PROV['Bundle']}) g.wasGeneratedBy('alice:bundle5', time='2012-05-25T11:15:00') g.agent('ex:Alice') g.wasAttributedTo('alice:bundle5', 'ex:Alice') # bundle bob:bundle4 # entity(ex:report1, [ prov:type="report", ex:version=1 ]) # wasGeneratedBy(ex:report1, -, 2012-05-24T10:00:01) # endBundle b4 = g.bundle('bob:bundle4') b4.entity('ex:report1', {'prov:type': "report", 'ex:version': 1}) b4.wasGeneratedBy('ex:report1', time='2012-05-24T10:00:01') # bundle alice:bundle5 # entity(ex:report1bis) # mentionOf(ex:report1bis, ex:report1, bob:bundle4) # entity(ex:report2, [ prov:type="report", ex:version=2 ]) # wasGeneratedBy(ex:report2, -, 2012-05-25T11:00:01) # wasDerivedFrom(ex:report2, ex:report1bis) # endBundle b5 = g.bundle('alice:bundle5') b5.entity('ex:report1bis') b5.mentionOf('ex:report1bis', 'ex:report1', 'bob:bundle4') b5.entity('ex:report2', [('prov:type', "report"), ('ex:version', 2)]) b5.wasGeneratedBy('ex:report2', time='2012-05-25T11:00:01') b5.wasDerivedFrom('ex:report2', 'ex:report1bis') # endDocument return g def collections(): g = ProvDocument() ex = Namespace('ex', 'http://example.org/') c1 = g.collection(ex['c1']) e1 = g.entity('ex:e1') g.hadMember(c1, e1) return g def datatypes(): g = ProvDocument() ex = Namespace('ex', 'http://example.org/') g.add_namespace(ex) attributes = { 'ex:int': 100, 'ex:float': 100.123456, 'ex:long': 123456789000, 'ex:bool': True, 'ex:str': 'Some string', 'ex:unicode': u'Some unicode string with accents: Huỳnh Trung Đông', 'ex:timedate': datetime.datetime(2012, 12, 12, 14, 7, 48), 'ex:intstr': Literal("PROV Internationalized string", PROV["InternationalizedString"], "en"), } multiline = """Line1 Line2 Line3""" attributes['ex:multi-line'] = multiline g.entity('ex:e1', attributes) return g def long_literals(): g = ProvDocument() long_uri = "http://Lorem.ipsum/dolor/sit/amet/consectetur/adipiscing/elit/Quisque/vel/sollicitudin/felis/nec/" \ "venenatis/massa/Aenean/lectus/arcu/sagittis/sit/amet/nisl/nec/varius/eleifend/sem/In/hac/habitasse/" \ "platea/dictumst/Aliquam/eget/fermentum/enim/Curabitur/auctor/elit/non/ipsum/interdum/at/orci/aliquam/" ex = Namespace('ex', long_uri) g.add_namespace(ex) g.entity('ex:e1', { 'prov:label': 'Lorem ipsum dolor sit amet, consectetur adipiscing elit. Donec pellentesque luctus nulla vel ' 'ullamcorper. Donec sit amet ligula sit amet lorem pretium rhoncus vel vel lorem. Sed at ' 'consequat metus, eget eleifend massa. Fusce a facilisis turpis. Lorem volutpat.' }) return g tests = [ ('Bundle1', bundles1), ('Bundle2', bundles2), ('Primer', primer_example), ('W3C Publication 1', w3c_publication_1), ('W3C Publication 2', w3c_publication_2), ('collections', collections), ('datatypes', datatypes), ('Long literals', long_literals), ]