comparison tool_dependencies.xml @ 0:a6d81014257d draft default tip

Initial upload - velvet will compile with 4 categories and maxkmer of 191

0:a6d81014257d

<?xml version="1.0"?>
<tool_dependency>
    <package name="velvet" version="1.2.10">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone git://github.com/dzerbino/velvet.git</action>
                <action type="shell_command">git reset --hard 9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3</action>
                <action type="shell_command">make -i CATEGORIES=4 MAXKMERLENGTH=191 OPENMP=1</action>
                <action type="move_file">
                    <source>velvetg</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>velveth</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
                <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/velveth</action>
                <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/velvetg</action>
            </actions>
        </install>
        <readme>
            Installs velvet version 1.2.10.
        </readme>
    </package>
</tool_dependency>