Mercurial > repos > simon-gladman > package_velvet_1_2_10

changeset 0:a6d81014257d draft default tip

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Initial upload - velvet will compile with 4 categories and maxkmer of 191
author simon-gladman
date Tue, 28 Jun 2016 17:27:47 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 28 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jun 28 17:27:47 2016 -0400
@@ -0,0 +1,28 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="velvet" version="1.2.10">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone git://github.com/dzerbino/velvet.git</action>
+                <action type="shell_command">git reset --hard 9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3</action>
+                <action type="shell_command">make -i CATEGORIES=4 MAXKMERLENGTH=191 OPENMP=1</action>
+                <action type="move_file">
+                    <source>velvetg</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
+                    <source>velveth</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/velveth</action>
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/velvetg</action>
+            </actions>
+        </install>
+        <readme>
+            Installs velvet version 1.2.10.
+        </readme>
+    </package>
+</tool_dependency>