Mercurial > repos > simon-gladman > velvetoptimiser

diff tool_dependencies.xml @ 0:d81360ea69d8 draft

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Initial upload
author simon-gladman
date Tue, 28 Jun 2016 17:30:32 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jun 28 17:30:32 2016 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="velvet" version="1.2.10">
+        <repository changeset_revision="a6d81014257d" name="package_velvet_1_2_10" owner="simon-gladman" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="velvetoptimiser" version="2.2.5">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.vicbioinformatics.com/VelvetOptimiser-2.2.5.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/VelvetOptimiser.pl</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>