Mercurial > repos > simon-gladman > velvetoptimiser

view tool_dependencies.xml @ 0:d81360ea69d8 draft

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Initial upload
author simon-gladman
date Tue, 28 Jun 2016 17:30:32 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="velvet" version="1.2.10">
        <repository changeset_revision="a6d81014257d" name="package_velvet_1_2_10" owner="simon-gladman" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="velvetoptimiser" version="2.2.5">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.vicbioinformatics.com/VelvetOptimiser-2.2.5.tar.gz</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/VelvetOptimiser.pl</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>