Mercurial > repos > siyuan > prada
comparison pyPRADA_1.2/tools/samtools-0.1.16/misc/Makefile @ 0:acc2ca1a3ba4
Uploaded
author | siyuan |
---|---|
date | Thu, 20 Feb 2014 00:44:58 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:acc2ca1a3ba4 |
---|---|
1 CC= gcc | |
2 CXX= g++ | |
3 CFLAGS= -g -Wall -O2 #-m64 #-arch ppc | |
4 CXXFLAGS= $(CFLAGS) | |
5 DFLAGS= -D_FILE_OFFSET_BITS=64 | |
6 OBJS= | |
7 PROG= md5sum-lite md5fa maq2sam-short maq2sam-long wgsim | |
8 INCLUDES= -I.. | |
9 SUBDIRS= . | |
10 | |
11 .SUFFIXES:.c .o | |
12 | |
13 .c.o: | |
14 $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@ | |
15 | |
16 all:$(PROG) | |
17 | |
18 lib-recur all-recur clean-recur cleanlocal-recur install-recur: | |
19 @target=`echo $@ | sed s/-recur//`; \ | |
20 wdir=`pwd`; \ | |
21 list='$(SUBDIRS)'; for subdir in $$list; do \ | |
22 cd $$subdir; \ | |
23 $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \ | |
24 INCLUDES="$(INCLUDES)" $$target || exit 1; \ | |
25 cd $$wdir; \ | |
26 done; | |
27 | |
28 lib: | |
29 | |
30 afs2:afs2.o | |
31 $(CC) $(CFLAGS) -o $@ afs2.o -lm -lz -L.. -lbam | |
32 | |
33 wgsim:wgsim.o | |
34 $(CC) $(CFLAGS) -o $@ wgsim.o -lm | |
35 | |
36 md5fa:md5.o md5fa.o md5.h ../kseq.h | |
37 $(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz | |
38 | |
39 md5sum-lite:md5sum-lite.o | |
40 $(CC) $(CFLAGS) -o $@ md5sum-lite.o | |
41 | |
42 md5sum-lite.o:md5.c md5.h | |
43 $(CC) -c $(CFLAGS) -DMD5SUM_MAIN -o $@ md5.c | |
44 | |
45 maq2sam-short:maq2sam.c | |
46 $(CC) $(CFLAGS) -o $@ maq2sam.c -lz | |
47 | |
48 maq2sam-long:maq2sam.c | |
49 $(CC) $(CFLAGS) -DMAQ_LONGREADS -o $@ maq2sam.c -lz | |
50 | |
51 md5fa.o:md5.h md5fa.c | |
52 $(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c | |
53 | |
54 afs2.o:afs2.c ../bam.h | |
55 $(CC) $(CFLAGS) -c -I.. -o $@ afs2.c | |
56 | |
57 cleanlocal: | |
58 rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a | |
59 | |
60 clean:cleanlocal-recur |