Mercurial > repos > siyuan > prada
diff pyPRADA_1.2/tools/samtools-0.1.16/misc/Makefile @ 0:acc2ca1a3ba4
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author | siyuan |
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date | Thu, 20 Feb 2014 00:44:58 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pyPRADA_1.2/tools/samtools-0.1.16/misc/Makefile Thu Feb 20 00:44:58 2014 -0500 @@ -0,0 +1,60 @@ +CC= gcc +CXX= g++ +CFLAGS= -g -Wall -O2 #-m64 #-arch ppc +CXXFLAGS= $(CFLAGS) +DFLAGS= -D_FILE_OFFSET_BITS=64 +OBJS= +PROG= md5sum-lite md5fa maq2sam-short maq2sam-long wgsim +INCLUDES= -I.. +SUBDIRS= . + +.SUFFIXES:.c .o + +.c.o: + $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@ + +all:$(PROG) + +lib-recur all-recur clean-recur cleanlocal-recur install-recur: + @target=`echo $@ | sed s/-recur//`; \ + wdir=`pwd`; \ + list='$(SUBDIRS)'; for subdir in $$list; do \ + cd $$subdir; \ + $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \ + INCLUDES="$(INCLUDES)" $$target || exit 1; \ + cd $$wdir; \ + done; + +lib: + +afs2:afs2.o + $(CC) $(CFLAGS) -o $@ afs2.o -lm -lz -L.. -lbam + +wgsim:wgsim.o + $(CC) $(CFLAGS) -o $@ wgsim.o -lm + +md5fa:md5.o md5fa.o md5.h ../kseq.h + $(CC) $(CFLAGS) -o $@ md5.o md5fa.o -lz + +md5sum-lite:md5sum-lite.o + $(CC) $(CFLAGS) -o $@ md5sum-lite.o + +md5sum-lite.o:md5.c md5.h + $(CC) -c $(CFLAGS) -DMD5SUM_MAIN -o $@ md5.c + +maq2sam-short:maq2sam.c + $(CC) $(CFLAGS) -o $@ maq2sam.c -lz + +maq2sam-long:maq2sam.c + $(CC) $(CFLAGS) -DMAQ_LONGREADS -o $@ maq2sam.c -lz + +md5fa.o:md5.h md5fa.c + $(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c + +afs2.o:afs2.c ../bam.h + $(CC) $(CFLAGS) -c -I.. -o $@ afs2.c + +cleanlocal: + rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a + +clean:cleanlocal-recur