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1 <tool id="piq" name="piq" version="PIQ: 1.3">
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2 <description> identify TFBSs at corresponding motifs from DNase-Seq experiments </description>
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3 <requirements>
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4 <requirement type="package">pymodules</requirement>
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5 <requirement type="package" version="3.3.3">R</requirement>
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6 <requirement type="package">piq</requirement>
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7 </requirements>
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8 <command interpreter="python">
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9 piq_wrapper.py
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10 --input $input
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11 --out-dir $output.extra_files_path
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12 --output $output
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13 </command>
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14 <inputs>
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15 <param format="bam" help="" name="input" optional="false" type="data"/>
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16 </inputs>
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17 <outputs>
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18 <data format="csv" label="${tool.name} on ${on_string}" name="output"/>
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19 </outputs>
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20 <help>
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21 </help>
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22 </tool>
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