Mercurial > repos > stemcellcommons > kallisto_rnaseq_workflows
annotate Kallisto_RNA-seq_(PE)_Quantification_-_Zebrafish.ga @ 1:cbf8233bf744 draft default tip
planemo upload commit dc4a5924dc98d22c14eac246506d13dfc13c3c6d
author | scottx611x |
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date | Tue, 04 Sep 2018 15:12:04 -0400 |
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1 { |
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2 "a_galaxy_workflow": "true", |
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3 "annotation": "{\n \"description\": \"Rapid transcript quantification via pseudoalignment (https://pachterlab.github.io/kallisto/). Paired-end reads are quantified against the danRer11 transcriptome.\",\n \"file_relationship\": {\n \"value_type\": \"LIST\",\n \"name\": \"List of Read Pairs\",\n \"file_relationship\": {\n \"file_relationship\": {},\n \"value_type\": \"PAIR\",\n \"name\": \"Read Pair\",\n \"input_files\": [{\n \"allowed_filetypes\": [{\"name\": \"FASTQ\"}],\n \"name\": \"Input File\",\n \"description\": \"Forward Reads\"\n },\n {\n \"allowed_filetypes\": [{\"name\": \"FASTQ\"}],\n \"name\": \"Input File\",\n \"description\": \"Reverse Reads\"\n }\n ]\n }\n }\n}", |
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4 "format-version": "0.1", |
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5 "name": "Kallisto RNA-seq (PE) Quantification - Zebrafish", |
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6 "steps": { |
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8 "annotation": "", |
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9 "content_id": null, |
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12 "input_connections": {}, |
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13 "inputs": [], |
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15 "name": "Input dataset collection", |
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18 "left": 366.5, |
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22 "tool_state": "{\"collection_type\": \"list:paired\"}", |
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24 "type": "data_collection_input", |
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31 } |
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32 ] |
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35 "annotation": "", |
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36 "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.3", |
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37 "errors": null, |
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38 "id": 1, |
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39 "input_connections": { |
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40 "single_paired|collection|reads": { |
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41 "id": 0, |
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42 "output_name": "output" |
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43 } |
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45 "inputs": [], |
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46 "label": null, |
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47 "name": "Kallisto quant", |
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48 "outputs": [ |
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49 { |
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50 "name": "abundance_h5", |
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51 "type": "h5" |
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53 { |
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54 "name": "abundance_tab", |
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55 "type": "tabular" |
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58 "name": "pseudobam_output", |
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59 "type": "bam" |
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62 "name": "fusion_output", |
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63 "type": "tabular" |
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66 "position": { |
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70 "post_job_actions": { |
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71 "HideDatasetActionabundance_h5": { |
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72 "action_arguments": {}, |
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73 "action_type": "HideDatasetAction", |
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74 "output_name": "abundance_h5" |
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76 "HideDatasetActionfusion_output": { |
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77 "action_arguments": {}, |
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78 "action_type": "HideDatasetAction", |
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79 "output_name": "fusion_output" |
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82 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.3", |
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83 "tool_shed_repository": { |
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84 "changeset_revision": "b818b23df1e0", |
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85 "name": "kallisto_quant", |
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86 "owner": "iuc", |
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87 "tool_shed": "toolshed.g2.bx.psu.edu" |
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90 "tool_version": "0.43.1.3", |
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91 "type": "tool", |
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92 "uuid": "df9dd3c7-028a-4b96-a09c-33bbb14db527", |
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93 "workflow_outputs": [ |
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96 "output_name": "pseudobam_output", |
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101 "output_name": "abundance_tab", |
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planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
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102 "uuid": "fe306756-a099-4e50-aa1f-6983dfff2d00" |
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103 } |
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planemo upload commit 96bf4e03fcbbbc1eb0e4b5af12c7da8aa4477fa8
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104 ] |
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105 } |
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106 }, |
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107 "uuid": "2ec7af1e-4f59-44a8-99d3-28ceda87411d" |
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108 } |