annotate Merge_FASTQ.ga @ 0:5703e64e15e9 draft default tip

Initial upload
author stemcellcommons
date Tue, 05 Dec 2017 14:58:39 -0500
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "{\n \"description\": \"Merges a list of FASTQ files into a single FASTQ.\",\n \"file_relationship\": {\n \"file_relationship\": {},\n \"value_type\": \"LIST\",\n \"name\": \"List of FASTQ Files\",\n \"input_files\": [\n {\n \"allowed_filetypes\": [{\"name\": \"FASTQ\"}],\n \"name\": \"Input File\",\n \"description\": \"File to be merged\"\n }\n ]\n }\n}",
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4 "format-version": "0.1",
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stemcellcommons
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5 "name": "Merge FASTQ",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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9 "content_id": null,
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10 "id": 0,
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11 "input_connections": {},
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12 "inputs": [
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13 {
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14 "description": "",
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15 "name": "Input Dataset Collection"
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16 }
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17 ],
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18 "label": null,
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19 "name": "Input dataset collection",
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20 "outputs": [],
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21 "position": {
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22 "left": 161.5,
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23 "top": 215.5
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24 },
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25 "tool_errors": null,
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26 "tool_id": null,
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27 "tool_state": "{\"collection_type\": \"list\", \"name\": \"Input Dataset Collection\"}",
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28 "tool_version": null,
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29 "type": "data_collection_input",
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30 "uuid": "38f167a0-9b63-4c15-92b8-15ade85b580b",
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31 "workflow_outputs": [
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32 {
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33 "label": null,
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34 "output_name": "output",
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35 "uuid": "2d4184c2-900b-435f-9850-fdd368909b74"
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36 }
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37 ]
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38 },
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39 "1": {
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40 "annotation": "",
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41 "content_id": "toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0",
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42 "id": 1,
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43 "input_connections": {
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44 "input_list": {
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45 "id": 0,
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46 "output_name": "output"
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47 }
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48 },
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49 "inputs": [],
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50 "label": null,
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stemcellcommons
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51 "name": "Collapse Collection",
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52 "outputs": [
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53 {
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54 "name": "output",
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55 "type": "input"
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56 }
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57 ],
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58 "position": {
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61 },
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62 "post_job_actions": {
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63 "ChangeDatatypeActionoutput": {
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64 "action_arguments": {
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65 "newtype": "fastq"
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66 },
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67 "action_type": "ChangeDatatypeAction",
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68 "output_name": "output"
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69 },
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70 "RenameDatasetActionoutput": {
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71 "action_arguments": {
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72 "newname": "merged"
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73 },
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74 "action_type": "RenameDatasetAction",
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75 "output_name": "output"
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76 }
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77 },
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78 "tool_errors": null,
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79 "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0",
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80 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input_list\": \"null\", \"one_header\": \"\\\"False\\\"\", \"filename\": \"{\\\"add_name\\\": \\\"False\\\", \\\"__current_case__\\\": 1}\"}",
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81 "tool_version": "4.0",
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82 "type": "tool",
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83 "uuid": "e0e26825-a370-4e76-ac2f-e7e90d028ff4",
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84 "workflow_outputs": [
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85 {
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86 "label": null,
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87 "output_name": "output",
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88 "uuid": "c7b6d000-a300-4dcf-9f8a-bcfd1052a585"
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89 }
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90 ]
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91 }
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92 },
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93 "uuid": "dd00f51a-b81d-433f-b178-7a02200a0ae4"
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94 }