Mercurial > repos > stemcellcommons > merging_workflows
comparison Merge_FASTQ.ga @ 0:5703e64e15e9 draft default tip
Initial upload
author | stemcellcommons |
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date | Tue, 05 Dec 2017 14:58:39 -0500 |
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-1:000000000000 | 0:5703e64e15e9 |
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1 { | |
2 "a_galaxy_workflow": "true", | |
3 "annotation": "{\n \"description\": \"Merges a list of FASTQ files into a single FASTQ.\",\n \"file_relationship\": {\n \"file_relationship\": {},\n \"value_type\": \"LIST\",\n \"name\": \"List of FASTQ Files\",\n \"input_files\": [\n {\n \"allowed_filetypes\": [{\"name\": \"FASTQ\"}],\n \"name\": \"Input File\",\n \"description\": \"File to be merged\"\n }\n ]\n }\n}", | |
4 "format-version": "0.1", | |
5 "name": "Merge FASTQ", | |
6 "steps": { | |
7 "0": { | |
8 "annotation": "", | |
9 "content_id": null, | |
10 "id": 0, | |
11 "input_connections": {}, | |
12 "inputs": [ | |
13 { | |
14 "description": "", | |
15 "name": "Input Dataset Collection" | |
16 } | |
17 ], | |
18 "label": null, | |
19 "name": "Input dataset collection", | |
20 "outputs": [], | |
21 "position": { | |
22 "left": 161.5, | |
23 "top": 215.5 | |
24 }, | |
25 "tool_errors": null, | |
26 "tool_id": null, | |
27 "tool_state": "{\"collection_type\": \"list\", \"name\": \"Input Dataset Collection\"}", | |
28 "tool_version": null, | |
29 "type": "data_collection_input", | |
30 "uuid": "38f167a0-9b63-4c15-92b8-15ade85b580b", | |
31 "workflow_outputs": [ | |
32 { | |
33 "label": null, | |
34 "output_name": "output", | |
35 "uuid": "2d4184c2-900b-435f-9850-fdd368909b74" | |
36 } | |
37 ] | |
38 }, | |
39 "1": { | |
40 "annotation": "", | |
41 "content_id": "toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0", | |
42 "id": 1, | |
43 "input_connections": { | |
44 "input_list": { | |
45 "id": 0, | |
46 "output_name": "output" | |
47 } | |
48 }, | |
49 "inputs": [], | |
50 "label": null, | |
51 "name": "Collapse Collection", | |
52 "outputs": [ | |
53 { | |
54 "name": "output", | |
55 "type": "input" | |
56 } | |
57 ], | |
58 "position": { | |
59 "left": 488, | |
60 "top": 218 | |
61 }, | |
62 "post_job_actions": { | |
63 "ChangeDatatypeActionoutput": { | |
64 "action_arguments": { | |
65 "newtype": "fastq" | |
66 }, | |
67 "action_type": "ChangeDatatypeAction", | |
68 "output_name": "output" | |
69 }, | |
70 "RenameDatasetActionoutput": { | |
71 "action_arguments": { | |
72 "newname": "merged" | |
73 }, | |
74 "action_type": "RenameDatasetAction", | |
75 "output_name": "output" | |
76 } | |
77 }, | |
78 "tool_errors": null, | |
79 "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0", | |
80 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input_list\": \"null\", \"one_header\": \"\\\"False\\\"\", \"filename\": \"{\\\"add_name\\\": \\\"False\\\", \\\"__current_case__\\\": 1}\"}", | |
81 "tool_version": "4.0", | |
82 "type": "tool", | |
83 "uuid": "e0e26825-a370-4e76-ac2f-e7e90d028ff4", | |
84 "workflow_outputs": [ | |
85 { | |
86 "label": null, | |
87 "output_name": "output", | |
88 "uuid": "c7b6d000-a300-4dcf-9f8a-bcfd1052a585" | |
89 } | |
90 ] | |
91 } | |
92 }, | |
93 "uuid": "dd00f51a-b81d-433f-b178-7a02200a0ae4" | |
94 } |