annotate pithya.xml @ 0:c288b90b86ed draft

planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
author sybila
date Tue, 04 Oct 2022 12:35:12 +0000
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c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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1 <tool id="pithya" name="PITHYA" version="@TOOL_VERSION@_galaxy0">
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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2 <description>- computes CTL parameter synthesis</description>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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3 <macros>
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4 <import>macros.xml</import>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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5 </macros>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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6 <expand macro="creator"/>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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7 <requirements>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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8 <container type="docker">sybila/pithya:@TOOL_VERSION@</container>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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9 </requirements>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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10 <command>pithya
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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11 -m '$input_model'
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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12 -p '$input_property'
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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13 --parallelism '$threads'
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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14 #if $cut_thrs
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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15 --cut-to-range
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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16 #end if
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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17 -r 'json'
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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18 -ro '$output'
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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19 -lo 'stdout'
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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20 </command>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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21
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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22 <inputs>
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23 <param format="pithya.model" name="input_model" type="data" label="Pithya model file."/>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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24 <param format="pithya.property" name="input_property" type="data" label="CTL property file."/>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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25 <param type="boolean" name="cut_thrs" checked="false" label="Cut the thresholds" help="...exceeding explicit minimum and maximum thresholds." />
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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26 <param name="threads" size="2" type="integer" min="1" max="32" value="2" label="Number of threads used for parallelism." />
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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27 </inputs>
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28
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29 <outputs>
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30 <data format="pithya.result" name="output" />
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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31 </outputs>
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32
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33 <tests>
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34 <test>
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35 <param name="input_model" value="example.pithya.model"/>
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36 <param name="input_property" value="properties.pithya.property"/>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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37 <output name="output" file="result.pithya.result"/>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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38 </test>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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39 </tests>
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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40
c288b90b86ed planemo upload for repository https://github.com/sybila/galaxytools/tree/main/tools/pithya commit 6a5b2e93f1e70d98b46c4963cac4210c3bfc78b9
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41 </tool>