Mercurial > repos > tduigou > icfree_instructor
changeset 3:e4682a0c66da draft
planemo upload for repository https://github.com/brsynth/icfree-ml commit 7640e2163acff6c925cba16188eaa4ce54639180
| author | tduigou |
|---|---|
| date | Tue, 23 Jul 2024 13:59:02 +0000 |
| parents | 4f1eeb35ade7 |
| children | 6d368cd4a9eb |
| files | instructor.xml macros.xml test-data/converter_proCFPS_parameters.tsv test-data/converter_sampling_concentrations.tsv test-data/converter_sampling_volumes.test-1.tsv test-data/converter_sampling_volumes.test-2.tsv test-data/destination_plate.csv test-data/instructor.access.test-2.csv test-data/instructor.hela.test-2.csv test-data/instructor.test-1.csv test-data/instructor.test-2.csv test-data/instructor_instructions.csv test-data/instructor_volumes_warnings.tsv test-data/plates_designer.destination_plate.test-1.csv test-data/plates_designer.destination_plate.test-2.csv test-data/plates_designer.source_plate.test-1.csv test-data/plates_designer.source_plate.test-2.csv test-data/plates_generator_destination_plate_1.test-1.json test-data/plates_generator_destination_plate_1.test-1.tsv test-data/plates_generator_destination_plate_1.test-2.tsv test-data/plates_generator_source_plate_1.test-1.json test-data/plates_generator_source_plate_1.test-1.tsv test-data/plates_generator_source_plate_1.test-2.tsv test-data/plates_generator_volumes_summary.test-1.tsv test-data/sampling.test-1.csv test-data/source_plate.csv |
| diffstat | 26 files changed, 249 insertions(+), 2422 deletions(-) [+] |
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--- a/instructor.xml Wed Feb 14 15:25:48 2024 +0000 +++ b/instructor.xml Tue Jul 23 13:59:02 2024 +0000 @@ -6,97 +6,67 @@ <expand macro="requirements"/> <expand macro="stdio"/> <command detect_errors="exit_code"><![CDATA[ - #set sps = [] - #set sws = [] - #set dps = [] - #set dws = [] - #for $x in $plates_generator: - #set $fname = str($x.element_identifier) - echo "$fname " && - ln -sfn '$x' '$fname' && - #if $fname.startswith('source') and $fname.endswith('json'): - #silent sps.append($fname) - #else if $fname.startswith('source') and $fname.endswith('tsv'): - #silent sws.append($fname) - #else if $fname.startswith('destination') and $fname.endswith('json'): - #silent dps.append($fname) - #else if $fname.startswith('destination') and $fname.endswith('tsv'): - #silent dws.append($fname) + python -m icfree.instructor + '$source_plate_file' + '$destination_plate_file' + 'instructor.csv' + --source_plate_type '$source_plate_type' + --max_transfer_volume '$max_transfer_volume' + #if str($adv.split_threshold) != '' + --split_threshold '$split_threshold' #end if - #end for - #set s_sps = '" "'.join($sps) - #set s_sws = '" "'.join($sws) - #set s_dps = '" "'.join($dps) - #set s_dws = '" "'.join($dws) - python -m icfree.instructor - --source_plates $s_sps - --source_wells $s_sws - --dest_plates $s_dps - --dest_wells $s_dws - -spt '$source_plate' - --robot '$robot' - --output-folder '.' && - mv instructions.csv '$output_instruction' && - #if not os.path.isfile('volumes_warnings.tsv') - touch volumes_warnings.tsv && - #end if - mv volumes_warnings.tsv '$output_warning' + #if str($adv.split_components) != '' + --split_components '$split_components' + #end if ]]></command> <inputs> - <param name="plates_generator" type="data_collection" collection_type="list" format="json,tabular" label="Source/Destination corresponding to plate/wells" help="Output from iCFree plates generator"/> - <param name="robot" type="select" label="Robot name"> - <option value="ECHO" selected="true">ECHO</option> - </param> - <param name="source_plate" type="select" label="Source plate type"> - <option value="384PP_AQ_GP3" selected="true">384PP_AQ_GP3</option> - <option value="384_AQ_CP">384_AQ_CP</option> - </param> + <param name="source_plate_file" type="data" format="csv" label="Source corresponding to plate/wells" help="Output from iCFree plates designer"/> + <param name="destination_plate_file" type="data" format="csv" label="Destination corresponding to plate/wells" help="Output from iCFree plates designer"/> + <section name="adv" title="Advanced Options" expanded="false"> + <param name="source_plate_type" type="text" value="default:384PP_AQ_GP3" label="Source plate type" help="Comma-separated list of component and plate type pairs, e.g., 'Component_1:384PP_AQ_CP,Component_2:384PP_AQ_GP3'. Default for all is default:384PP_AQ_GP3." > + <validator type="empty_field" message="Source plate type is required"/> + </param> + <param argument="max_transfer_volume" type="integer" min="1" max="50000" value="500" label="Maximum transfer volume" help="Maximum volume for a single transfer. If not specified, no splitting will be performed." /> + <param argument="split_threshold" type="integer" min="1" max="50000" value="500" label="Split threshold" help="Volume threshold above which transfers need to be split. If not specified, no splitting will be performed." /> + <param name="split_components" type="text" optional="true" label="Split components" help="Comma-separated list of component names to create separate files for." > + </param> + </section> </inputs> <outputs> - <data name="output_warning" format="tabular" label="${tool.name} - Warning" /> - <data name="output_instruction" format="csv" label="${tool.name} - Instruction" /> + <collection name="output_instructor" type="list" label="${tool.name} - Instructor"> + <discover_datasets pattern="__designation_and_ext__" format="csv" directory="."/> + </collection> </outputs> <tests> <test> - <!-- test 1: check if identical outputs are produced with default parameters --> - <param name="plates_generator"> - <collection type="list"> - <element name="source_plate_1.json" value="plates_generator_source_plate_1.test-1.json" /> - <element name="source_plate_1.tsv" value="plates_generator_source_plate_1.test-1.tsv" /> - <element name="destination_plate_1.json" value="plates_generator_destination_plate_1.test-1.json" /> - <element name="destination_plate_1.tsv" value="plates_generator_destination_plate_1.test-1.tsv" /> - </collection> - </param> - <output name="output_warning" ftype="tabular"> - <assert_contents> - <has_n_lines n="12"/> - <has_line_matching expression="^Parameter\tMin\tMax\tPlate$"/> - </assert_contents> - </output> - <output name="output_instruction" file="instructor_instructions.csv" ftype="csv" compare="diff" /> + <!-- python -m icfree.instructor plates_designer.source_plate.test-2.csv plates_designer.destination_plate.test-2.csv 'instructor.test-1.csv' -source_plate_type 'default:384PP_AQ_GP3' -max_transfer_volume '500' -split_threshold '500' --> + <param name="source_plate_file" value="plates_designer.source_plate.test-2.csv" /> + <param name="destination_plate_file" value="plates_designer.destination_plate.test-2.csv" /> + <output_collection name="output_instructor" type="list" count="1"> + <element name="instructor" file="instructor.test-1.csv" ftype="csv" compare="diff" /> + </output_collection> + </test> + <test> + <!-- python -m icfree.instructor plates_designer.source_plate.test-2.csv plates_designer.destination_plate.test-2.csv 'instructor.csv' -source_plate_type 'Hela lysate:384PP_AQ_CP,Access prot 50X:384PP_AQ_GP3,Reaction mix:384PP_AQ_GP3,RNA 1ug/uL:384PP_AQ_GP3' -max_transfer_volume '500' -split_threshold '500' -split_components 'Hela lysate,Access prot 50X' --> + <param name="source_plate_file" value="plates_designer.source_plate.test-2.csv" /> + <param name="destination_plate_file" value="plates_designer.destination_plate.test-2.csv" /> + <param name="source_plate_type" value="Hela lysate:384PP_AQ_CP,Access prot 50%:384PP_AQ_GP3,Reaction mix:384PP_AQ_GP3,RNA 1ug/uL:384PP_AQ_GP3" /> + <param name="split_components" value="Hela lysate,Access prot 50%" /> + <output_collection name="output_instructor" type="list" count="3"> + <element name="instructor" file="instructor.test-2.csv" ftype="csv" compare="diff" /> + <element name="instructor_Hela lysate" file="instructor.hela.test-2.csv" ftype="csv" compare="diff" /> + <!-- + <element name="instructor_Access prot 50X" file="instructor.access.test-2.csv" ftype="csv" compare="diff" /> + --> + </output_collection> </test> </tests> <help><![CDATA[ Instructor ========== - -The module generates a list of instructions to perform the experiment. - -Input ------ -Required: -* **A collection**: a collection with source/destination plates/wells, coming from iCFree plates generator tool. +The module generates a list of instructions for handling the generated plates. -Advanced options: ------------------ -* **Robot name**: name of the robot to generate instructions for (default: "ECHO") -* **Source plate type**: type of plate used (default: "384PP_AQ_GP3") - -Output ------- -* **instructions**: contains the instructions to perform the experiment -* **volumes_warning**: contains the volumes that may cause issues with the chosen robot - ]]></help> +]]></help> <expand macro="creator"/> <expand macro="citation"/> </tool>
--- a/macros.xml Wed Feb 14 15:25:48 2024 +0000 +++ b/macros.xml Tue Jul 23 13:59:02 2024 +0000 @@ -1,10 +1,10 @@ <macros> - <token name="@TOOL_VERSION@">2.1.2</token> + <token name="@TOOL_VERSION@">2.4.0</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@LICENSE@">MIT</token> <xml name="requirements"> <requirements> - <requirement type="package" version="@TOOL_VERSION@">icfree</requirement> + <requirement type="package" version="@TOOL_VERSION@">icfree-ml</requirement> <yield/> </requirements> </xml>
--- a/test-data/converter_proCFPS_parameters.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,17 +0,0 @@ -Parameter maxValue stockConcentration deadVolume Ratios -Mg-glutamate 4 168 0 0.0 0.1 0.3 0.5 1.0 -k-glutamate 80 3360 0 -CoA 0.26 210 0 -3-PGA 30 1400 0 -NTP 1.5 630 0 -NAD 0.33 138.6 0 -Folinic acid 0.068 28.56 0 -Spermidine 1 420 0 -tRNA 0.2 84 0 -Amino acids 1.5 6 0 -CAMP 0.75 200 0 -Extract 30 300 2000 1 -HEPES 50 2100 0 1 -PEG 2 200 4000 1 -Promoter 10 300 0 1 -RBS 10 200 0 1 \ No newline at end of file
--- a/test-data/converter_sampling_concentrations.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,101 +0,0 @@ -Mg-glutamate k-glutamate CoA 3-PGA NTP NAD Folinic acid Spermidine tRNA Amino acids CAMP Extract HEPES PEG Promoter RBS -0.4 44.8 0.0 21.6 0.6 0.0 0.049 0.2 0.112 1.2 0.15 30.0 50.0 2.0 10.0 10.0 -4.0 32.0 0.104 6.0 0.3 0.264 0.014 0.56 0.08 0.3 0.6 30.0 50.0 2.0 10.0 10.0 -4.0 0.0 0.146 0.0 0.0 0.132 0.027 0.8 0.04 0.6 0.75 30.0 50.0 2.0 10.0 10.0 -0.0 32.0 0.052 6.0 1.08 0.132 0.054 0.0 0.144 1.5 0.6 30.0 50.0 2.0 10.0 10.0 -2.0 64.0 0.0 12.0 1.5 0.066 0.044 0.64 0.16 0.3 0.3 30.0 50.0 2.0 10.0 10.0 -0.4 80.0 0.0 30.0 0.84 0.066 0.038 0.4 0.0 1.2 0.48 30.0 50.0 2.0 10.0 10.0 -2.0 51.2 0.208 12.0 0.3 0.066 0.038 0.56 0.08 1.2 0.3 30.0 50.0 2.0 10.0 10.0 -2.0 32.0 0.104 24.0 1.5 0.33 0.014 0.8 0.08 0.3 0.15 30.0 50.0 2.0 10.0 10.0 -0.0 44.8 0.208 21.6 1.2 0.238 0.038 0.2 0.0 0.96 0.3 30.0 50.0 2.0 10.0 10.0 -2.0 16.0 0.208 24.0 0.84 0.264 0.014 1.0 0.04 0.84 0.75 30.0 50.0 2.0 10.0 10.0 -1.2 57.6 0.0 24.0 0.96 0.132 0.027 0.2 0.112 0.3 0.3 30.0 50.0 2.0 10.0 10.0 -1.2 16.0 0.166 21.6 0.3 0.066 0.068 0.4 0.144 0.6 0.3 30.0 50.0 2.0 10.0 10.0 -1.2 16.0 0.26 19.2 0.96 0.066 0.044 0.4 0.08 1.2 0.15 30.0 50.0 2.0 10.0 10.0 -0.4 80.0 0.104 30.0 0.84 0.33 0.068 0.8 0.112 1.08 0.0 30.0 50.0 2.0 10.0 10.0 -4.0 32.0 0.104 24.0 1.2 0.0 0.038 0.2 0.112 0.3 0.54 30.0 50.0 2.0 10.0 10.0 -4.0 64.0 0.104 24.0 1.08 0.185 0.049 0.72 0.08 0.3 0.42 30.0 50.0 2.0 10.0 10.0 -1.2 0.0 0.208 0.0 1.08 0.238 0.049 0.56 0.2 0.96 0.75 30.0 50.0 2.0 10.0 10.0 -2.0 16.0 0.208 6.0 0.84 0.211 0.038 0.2 0.128 1.2 0.6 30.0 50.0 2.0 10.0 10.0 -4.0 64.0 0.146 16.8 0.96 0.132 0.049 0.4 0.0 0.84 0.42 30.0 50.0 2.0 10.0 10.0 -1.2 44.8 0.208 12.0 1.08 0.264 0.068 0.0 0.16 0.6 0.6 30.0 50.0 2.0 10.0 10.0 -2.0 44.8 0.26 16.8 1.2 0.185 0.044 0.72 0.0 0.6 0.3 30.0 50.0 2.0 10.0 10.0 -4.0 0.0 0.052 12.0 0.6 0.132 0.027 0.4 0.04 0.6 0.0 30.0 50.0 2.0 10.0 10.0 -4.0 32.0 0.052 16.8 1.2 0.264 0.014 0.2 0.08 0.3 0.3 30.0 50.0 2.0 10.0 10.0 -2.0 44.8 0.052 16.8 0.3 0.066 0.049 0.8 0.04 1.2 0.48 30.0 50.0 2.0 10.0 10.0 -4.0 80.0 0.0 16.8 0.3 0.264 0.054 0.56 0.16 0.6 0.15 30.0 50.0 2.0 10.0 10.0 -1.2 44.8 0.0 6.0 0.6 0.211 0.054 0.56 0.144 0.0 0.15 30.0 50.0 2.0 10.0 10.0 -2.0 0.0 0.146 21.6 1.2 0.0 0.027 0.0 0.04 0.84 0.6 30.0 50.0 2.0 10.0 10.0 -0.4 16.0 0.166 6.0 0.3 0.33 0.068 1.0 0.16 0.6 0.54 30.0 50.0 2.0 10.0 10.0 -1.2 57.6 0.208 24.0 0.3 0.211 0.038 0.4 0.2 1.08 0.75 30.0 50.0 2.0 10.0 10.0 -0.4 80.0 0.052 30.0 0.3 0.264 0.0 0.72 0.128 1.08 0.0 30.0 50.0 2.0 10.0 10.0 -2.0 32.0 0.146 12.0 1.2 0.211 0.054 0.64 0.08 0.96 0.6 30.0 50.0 2.0 10.0 10.0 -1.2 51.2 0.146 12.0 0.6 0.132 0.014 0.2 0.0 1.08 0.54 30.0 50.0 2.0 10.0 10.0 -2.0 64.0 0.052 30.0 1.2 0.066 0.068 0.8 0.128 0.3 0.15 30.0 50.0 2.0 10.0 10.0 -4.0 0.0 0.208 0.0 0.3 0.0 0.044 0.0 0.16 0.6 0.15 30.0 50.0 2.0 10.0 10.0 -1.2 64.0 0.26 0.0 0.0 0.264 0.0 0.56 0.04 1.2 0.54 30.0 50.0 2.0 10.0 10.0 -2.0 64.0 0.052 6.0 0.96 0.185 0.038 0.0 0.112 0.84 0.6 30.0 50.0 2.0 10.0 10.0 -4.0 64.0 0.187 6.0 0.3 0.185 0.027 0.4 0.112 0.3 0.15 30.0 50.0 2.0 10.0 10.0 -1.2 51.2 0.052 24.0 0.6 0.185 0.027 0.4 0.08 0.6 0.3 30.0 50.0 2.0 10.0 10.0 -4.0 16.0 0.104 24.0 0.0 0.185 0.054 0.4 0.04 1.2 0.54 30.0 50.0 2.0 10.0 10.0 -2.0 32.0 0.26 12.0 1.08 0.238 0.044 0.2 0.08 1.5 0.48 30.0 50.0 2.0 10.0 10.0 -2.0 64.0 0.187 6.0 0.6 0.33 0.038 0.8 0.144 0.3 0.15 30.0 50.0 2.0 10.0 10.0 -4.0 32.0 0.104 6.0 0.84 0.132 0.027 0.2 0.04 0.96 0.75 30.0 50.0 2.0 10.0 10.0 -4.0 0.0 0.104 6.0 0.6 0.33 0.0 1.0 0.16 1.08 0.3 30.0 50.0 2.0 10.0 10.0 -0.4 51.2 0.26 12.0 0.0 0.264 0.014 0.4 0.0 0.3 0.3 30.0 50.0 2.0 10.0 10.0 -2.0 80.0 0.187 24.0 0.6 0.264 0.027 0.8 0.08 1.2 0.6 30.0 50.0 2.0 10.0 10.0 -2.0 16.0 0.26 24.0 0.6 0.132 0.027 1.0 0.04 0.3 0.48 30.0 50.0 2.0 10.0 10.0 -2.0 57.6 0.26 6.0 1.08 0.238 0.054 0.2 0.04 0.84 0.3 30.0 50.0 2.0 10.0 10.0 -0.0 16.0 0.052 30.0 1.5 0.33 0.068 1.0 0.16 1.5 0.15 30.0 50.0 2.0 10.0 10.0 -4.0 80.0 0.146 12.0 0.84 0.066 0.054 0.2 0.08 1.08 0.54 30.0 50.0 2.0 10.0 10.0 -4.0 32.0 0.052 12.0 0.3 0.066 0.027 0.0 0.16 0.0 0.42 30.0 50.0 2.0 10.0 10.0 -2.0 16.0 0.104 30.0 0.3 0.132 0.044 1.0 0.128 0.6 0.54 30.0 50.0 2.0 10.0 10.0 -1.2 16.0 0.104 16.8 1.2 0.066 0.068 0.4 0.16 0.3 0.48 30.0 50.0 2.0 10.0 10.0 -1.2 51.2 0.187 19.2 1.5 0.264 0.014 0.0 0.2 0.84 0.15 30.0 50.0 2.0 10.0 10.0 -2.0 64.0 0.146 6.0 1.5 0.066 0.014 0.56 0.2 0.84 0.3 30.0 50.0 2.0 10.0 10.0 -0.4 16.0 0.104 12.0 0.3 0.132 0.054 0.0 0.04 0.6 0.48 30.0 50.0 2.0 10.0 10.0 -4.0 16.0 0.146 24.0 0.6 0.0 0.014 0.8 0.08 0.3 0.48 30.0 50.0 2.0 10.0 10.0 -4.0 44.8 0.052 12.0 0.96 0.211 0.0 0.0 0.08 1.5 0.3 30.0 50.0 2.0 10.0 10.0 -4.0 57.6 0.166 19.2 0.96 0.066 0.0 0.8 0.128 1.5 0.75 30.0 50.0 2.0 10.0 10.0 -0.4 16.0 0.166 16.8 0.3 0.0 0.014 1.0 0.16 1.5 0.3 30.0 50.0 2.0 10.0 10.0 -2.0 80.0 0.0 24.0 0.0 0.264 0.014 0.8 0.0 0.3 0.42 30.0 50.0 2.0 10.0 10.0 -2.0 57.6 0.052 16.8 0.6 0.066 0.014 0.72 0.128 1.5 0.15 30.0 50.0 2.0 10.0 10.0 -2.0 57.6 0.104 24.0 0.3 0.132 0.027 0.8 0.112 0.96 0.42 30.0 50.0 2.0 10.0 10.0 -0.0 0.0 0.187 19.2 0.84 0.066 0.0 0.2 0.0 0.84 0.75 30.0 50.0 2.0 10.0 10.0 -2.0 64.0 0.26 16.8 0.96 0.264 0.027 0.64 0.144 1.2 0.6 30.0 50.0 2.0 10.0 10.0 -1.2 32.0 0.104 16.8 0.6 0.132 0.027 0.72 0.08 0.6 0.15 30.0 50.0 2.0 10.0 10.0 -1.2 16.0 0.052 6.0 0.84 0.33 0.014 0.0 0.144 1.08 0.6 30.0 50.0 2.0 10.0 10.0 -1.2 64.0 0.208 6.0 0.6 0.238 0.049 0.72 0.0 0.0 0.42 30.0 50.0 2.0 10.0 10.0 -2.0 80.0 0.052 19.2 1.5 0.185 0.027 0.4 0.112 0.84 0.15 30.0 50.0 2.0 10.0 10.0 -2.0 57.6 0.052 0.0 1.08 0.238 0.014 0.64 0.08 0.6 0.3 30.0 50.0 2.0 10.0 10.0 -2.0 16.0 0.166 19.2 0.0 0.185 0.054 0.56 0.128 1.08 0.0 30.0 50.0 2.0 10.0 10.0 -0.0 32.0 0.104 12.0 0.84 0.0 0.038 0.64 0.144 0.0 0.6 30.0 50.0 2.0 10.0 10.0 -0.4 0.0 0.208 12.0 1.2 0.185 0.054 0.2 0.2 0.96 0.3 30.0 50.0 2.0 10.0 10.0 -2.0 44.8 0.26 21.6 0.0 0.33 0.014 0.8 0.2 1.5 0.42 30.0 50.0 2.0 10.0 10.0 -2.0 32.0 0.052 6.0 1.5 0.132 0.014 0.4 0.112 0.84 0.3 30.0 50.0 2.0 10.0 10.0 -2.0 32.0 0.166 19.2 1.5 0.238 0.014 0.64 0.16 0.6 0.42 30.0 50.0 2.0 10.0 10.0 -1.2 32.0 0.146 0.0 0.0 0.185 0.068 0.56 0.04 1.2 0.54 30.0 50.0 2.0 10.0 10.0 -2.0 57.6 0.052 0.0 1.2 0.211 0.027 0.72 0.04 1.2 0.75 30.0 50.0 2.0 10.0 10.0 -4.0 80.0 0.052 30.0 0.6 0.0 0.054 0.56 0.112 0.0 0.0 30.0 50.0 2.0 10.0 10.0 -0.4 16.0 0.187 0.0 1.2 0.264 0.0 0.2 0.16 1.2 0.75 30.0 50.0 2.0 10.0 10.0 -4.0 32.0 0.104 12.0 0.3 0.132 0.027 0.8 0.112 0.0 0.15 30.0 50.0 2.0 10.0 10.0 -4.0 16.0 0.208 21.6 0.0 0.264 0.049 0.2 0.0 0.0 0.15 30.0 50.0 2.0 10.0 10.0 -2.0 64.0 0.187 12.0 0.6 0.132 0.027 0.2 0.04 0.96 0.75 30.0 50.0 2.0 10.0 10.0 -2.0 32.0 0.104 30.0 0.3 0.066 0.044 0.56 0.04 0.96 0.15 30.0 50.0 2.0 10.0 10.0 -4.0 80.0 0.166 19.2 0.6 0.132 0.027 0.2 0.2 0.0 0.48 30.0 50.0 2.0 10.0 10.0 -0.4 0.0 0.208 0.0 1.5 0.211 0.068 1.0 0.08 0.3 0.0 30.0 50.0 2.0 10.0 10.0 -0.4 51.2 0.26 30.0 1.2 0.185 0.054 0.4 0.2 0.3 0.0 30.0 50.0 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--- a/test-data/converter_sampling_volumes.test-1.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,101 +0,0 @@ -Mg-glutamate k-glutamate CoA 3-PGA NTP NAD Folinic acid Spermidine tRNA Amino acids CAMP Extract HEPES PEG Promoter RBS -2.5 12.5 2.5 15.0 0.0 0.0 2.5 0.0 2.5 200.0 0.0 100.0 25.0 10.0 32.5 50.0 -25.0 10.0 2.5 5.0 0.0 2.5 0.0 2.5 0.0 50.0 2.5 100.0 25.0 10.0 32.5 50.0 -25.0 0.0 2.5 0.0 0.0 0.0 0.0 2.5 0.0 100.0 5.0 100.0 25.0 10.0 32.5 50.0 -0.0 10.0 2.5 5.0 2.5 0.0 2.5 0.0 2.5 250.0 2.5 100.0 25.0 10.0 32.5 50.0 -12.5 20.0 2.5 7.5 2.5 0.0 2.5 2.5 2.5 50.0 2.5 100.0 25.0 10.0 32.5 50.0 -2.5 25.0 2.5 22.5 2.5 0.0 2.5 0.0 0.0 200.0 2.5 100.0 25.0 10.0 32.5 50.0 -12.5 15.0 2.5 7.5 0.0 0.0 2.5 2.5 0.0 200.0 2.5 100.0 25.0 10.0 32.5 50.0 -12.5 10.0 2.5 17.5 2.5 2.5 0.0 2.5 0.0 50.0 0.0 100.0 25.0 10.0 32.5 50.0 -0.0 12.5 2.5 15.0 2.5 2.5 2.5 0.0 0.0 160.0 2.5 100.0 25.0 10.0 32.5 50.0 -12.5 5.0 2.5 17.5 2.5 2.5 0.0 2.5 0.0 140.0 5.0 100.0 25.0 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--- a/test-data/converter_sampling_volumes.test-2.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,101 +0,0 @@ -Mg-glutamate k-glutamate CoA 3-PGA NTP NAD Folinic acid Spermidine tRNA Amino acids CAMP Extract HEPES PEG Promoter RBS -0.0 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 20.0 2.5 10.0 2.5 2.5 2.5 5.0 -2.5 0.0 2.5 0.0 2.5 2.5 2.5 2.5 2.5 5.0 2.5 10.0 2.5 2.5 2.5 5.0 -2.5 0.0 2.5 0.0 2.5 2.5 2.5 2.5 2.5 10.0 2.5 10.0 2.5 2.5 2.5 5.0 -0.0 0.0 2.5 0.0 2.5 2.5 2.5 2.5 2.5 25.0 2.5 10.0 2.5 2.5 2.5 5.0 -0.0 2.5 2.5 0.0 2.5 2.5 2.5 2.5 2.5 5.0 2.5 10.0 2.5 2.5 2.5 5.0 -0.0 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 20.0 2.5 10.0 2.5 2.5 2.5 5.0 -0.0 2.5 2.5 0.0 2.5 2.5 2.5 2.5 2.5 20.0 2.5 10.0 2.5 2.5 2.5 5.0 -0.0 0.0 2.5 2.5 2.5 2.5 2.5 2.5 2.5 5.0 2.5 10.0 2.5 2.5 2.5 5.0 -0.0 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 15.0 2.5 10.0 2.5 2.5 2.5 5.0 -0.0 0.0 2.5 2.5 2.5 2.5 2.5 2.5 2.5 15.0 2.5 10.0 2.5 2.5 2.5 5.0 -0.0 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 5.0 2.5 10.0 2.5 2.5 2.5 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/destination_plate.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,4 @@ +Well,Hela lysate,Access prot 50%,Reaction mix,RNA 1ug/uL,Water +A1,492.5,25.0,310.0,152.5,5020.0 +B1,970.0,165.0,257.5,112.5,4495.0 +C1,537.5,325.0,192.5,185.0,4760.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/instructor.access.test-2.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,7 @@ +Source Plate Name,Source Plate Type,Source Well,Destination Plate Name,Destination Well,Transfer Volume,Sample ID +Source[1],384PP_AQ_GP3,C1,Destination[1],A1,25.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],B1,165.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],C1,325.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],D1,25.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],E1,165.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],F1,325.0,Access prot 50%
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/instructor.hela.test-2.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,11 @@ +Source Plate Name,Source Plate Type,Source Well,Destination Plate Name,Destination Well,Transfer Volume,Sample ID +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],A1,492.5,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],B1,500.0,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],B1,470.0,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],C1,500.0,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],C1,37.5,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],D1,492.5,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],E1,500.0,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],E1,470.0,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],F1,500.0,Hela lysate +Source[1],384PP_AQ_CP,{A1;B1},Destination[1],F1,37.5,Hela lysate
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/instructor.test-1.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,77 @@ +Source Plate Name,Source Plate Type,Source Well,Destination Plate Name,Destination Well,Transfer Volume,Sample ID +Source[1],384PP_AQ_GP3,C1,Destination[1],A1,25.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],B1,165.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],C1,325.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],D1,25.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],E1,165.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],F1,325.0,Access prot 50% +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],A1,492.5,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],B1,500.0,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],B1,470.0,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],C1,500.0,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],C1,37.5,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],D1,492.5,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],E1,500.0,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],E1,470.0,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],F1,500.0,Hela lysate +Source[1],384PP_AQ_GP3,{A1;B1},Destination[1],F1,37.5,Hela lysate +Source[1],384PP_AQ_GP3,E1,Destination[1],A1,152.5,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],B1,112.5,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],C1,185.0,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],D1,152.5,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],E1,112.5,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],F1,185.0,RNA 1ug/uL +Source[1],384PP_AQ_GP3,D1,Destination[1],A1,310.0,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],B1,257.5,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],C1,192.5,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],D1,310.0,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],E1,257.5,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],F1,192.5,Reaction mix +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,20.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,495.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,260.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,20.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,495.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,260.0,Water
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/instructor.test-2.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,67 @@ +Source Plate Name,Source Plate Type,Source Well,Destination Plate Name,Destination Well,Transfer Volume,Sample ID +Source[1],384PP_AQ_GP3,C1,Destination[1],A1,25.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],B1,165.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],C1,325.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],D1,25.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],E1,165.0,Access prot 50% +Source[1],384PP_AQ_GP3,C1,Destination[1],F1,325.0,Access prot 50% +Source[1],384PP_AQ_GP3,E1,Destination[1],A1,152.5,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],B1,112.5,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],C1,185.0,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],D1,152.5,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],E1,112.5,RNA 1ug/uL +Source[1],384PP_AQ_GP3,E1,Destination[1],F1,185.0,RNA 1ug/uL +Source[1],384PP_AQ_GP3,D1,Destination[1],A1,310.0,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],B1,257.5,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],C1,192.5,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],D1,310.0,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],E1,257.5,Reaction mix +Source[1],384PP_AQ_GP3,D1,Destination[1],F1,192.5,Reaction mix +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],A1,20.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],B1,495.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],C1,260.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],D1,20.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],E1,495.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,500.0,Water +Source[1],384PP_AQ_GP3,F1,Destination[1],F1,260.0,Water
--- a/test-data/instructor_instructions.csv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1701 +0,0 @@ -Source Plate Name,Source Plate Type,Source Well,Destination Plate Name,Destination Well,Transfer Volume,Sample ID -Source[1],384PP_AQ_GP3,A1,Destination[1],A1,0.4,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],B1,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],C1,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],D1,0.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],E1,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],F1,0.4,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],G1,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],H1,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],I1,0.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],J1,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],K1,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],L1,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],M1,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],N1,0.4,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],O1,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],P1,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],A2,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],B2,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],C2,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],D2,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],E2,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],F2,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],G2,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],H2,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],I2,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],J2,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],K2,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],L2,0.4,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],M2,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],N2,0.4,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],O2,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],P2,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],A3,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],B3,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],C3,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],D3,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],E3,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],F3,1.2,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],G3,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],H3,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],I3,2.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],J3,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],K3,4.0,Mg-glutamate -Source[1],384PP_AQ_GP3,A1,Destination[1],L3,0.4,Mg-glutamate 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-Source[1],384PP_AQ_GP3,J1,Destination[1],I3,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],J3,0.96,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],K3,1.08,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],L3,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],M3,1.2,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],N3,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],O3,0.84,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],P3,1.5,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],A4,1.08,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],B4,0.0,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],C4,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],D4,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],E4,0.84,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],F4,0.84,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],G4,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],H4,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],I4,1.5,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],J4,1.5,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],K4,1.5,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],L4,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],M4,1.5,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],N4,0.96,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],O4,0.84,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],P4,1.2,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],A5,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],B5,1.08,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],C5,0.0,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],D5,0.84,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],E5,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],F5,1.08,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],G5,0.0,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],H5,0.96,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],I5,1.5,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],J5,0.84,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],K5,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],L5,1.2,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],M5,1.2,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],N5,0.0,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],O5,1.2,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],P5,0.0,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],A6,0.0,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],B6,0.96,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],C6,0.96,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],D6,0.0,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],E6,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],F6,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],G6,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],H6,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],I6,1.2,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],J6,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],K6,1.5,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],L6,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],M6,1.5,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],N6,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],O6,0.6,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],P6,0.84,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],A7,0.84,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],B7,0.3,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],C7,0.0,Amino acids -Source[1],384PP_AQ_GP3,J1,Destination[1],D7,0.0,Amino acids -Source[1],384PP_AQ_GP3,K1,Destination[1],A1,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],B1,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],C1,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],D1,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],E1,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],F1,0.48,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],G1,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],H1,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],I1,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],J1,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],K1,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],L1,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],M1,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],N1,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],O1,0.54,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],P1,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],A2,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],B2,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],C2,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],D2,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],E2,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],F2,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],G2,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],H2,0.48,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],I2,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],J2,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],K2,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],L2,0.54,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],M2,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],N2,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],O2,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],P2,0.54,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],A3,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],B3,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],C3,0.54,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],D3,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],E3,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],F3,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],G3,0.54,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],H3,0.48,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],I3,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],J3,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],K3,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],L3,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],M3,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],N3,0.48,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],O3,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],P3,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],A4,0.54,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],B4,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],C4,0.54,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],D4,0.48,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],E4,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],F4,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],G4,0.48,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],H4,0.48,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],I4,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],J4,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],K4,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],L4,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],M4,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],N4,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],O4,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],P4,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],A5,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],B5,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],C5,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],D5,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],E5,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],F5,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],G5,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],H5,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],I5,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],J5,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],K5,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],L5,0.54,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],M5,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],N5,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],O5,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],P5,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],A6,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],B6,0.75,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],C6,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],D6,0.48,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],E6,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],F6,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],G6,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],H6,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],I6,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],J6,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],K6,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],L6,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],M6,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],N6,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],O6,0.0,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],P6,0.3,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],A7,0.6,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],B7,0.15,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],C7,0.42,CAMP -Source[1],384PP_AQ_GP3,K1,Destination[1],D7,0.42,CAMP -Source[1],384PP_AQ_GP3,L1,Destination[1],A1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],B1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],C1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],D1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],E1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],F1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],G1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],H1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],I1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],J1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],K1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],L1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],M1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],N1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],O1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],P1,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],A2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],B2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],C2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],D2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],E2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],F2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],G2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],H2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],I2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],J2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],K2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],L2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],M2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],N2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],O2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],P2,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],A3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],B3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],C3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],D3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],E3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],F3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],G3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],H3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],I3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],J3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],K3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],L3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],M3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],N3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],O3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],P3,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],A4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],B4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],C4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],D4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],E4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],F4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],G4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],H4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],I4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],J4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],K4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],L4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],M4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],N4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],O4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],P4,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],A5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],B5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],C5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],D5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],E5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],F5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],G5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],H5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],I5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],J5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],K5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],L5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],M5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],N5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],O5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],P5,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],A6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],B6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],C6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],D6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],E6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],F6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],G6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],H6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],I6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],J6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],K6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],L6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],M6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],N6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],O6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],P6,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],A7,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],B7,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],C7,30.0,Extract -Source[1],384PP_AQ_GP3,L1,Destination[1],D7,30.0,Extract -Source[1],384PP_AQ_GP3,M1,Destination[1],A1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],B1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],C1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],D1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],E1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],F1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],G1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],H1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],I1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],J1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],K1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],L1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],M1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],N1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],O1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],P1,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],A2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],B2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],C2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],D2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],E2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],F2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],G2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],H2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],I2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],J2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],K2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],L2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],M2,50.0,HEPES -Source[1],384PP_AQ_GP3,M1,Destination[1],N2,50.0,HEPES 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-Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],J1,852.044,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],K1,813.169,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],L1,857.156,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],M1,858.44,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],N1,784.2660000000001,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],O1,835.506,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],P1,803.062,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],A2,892.755,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],B2,870.575,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],C2,810.2529999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],D2,837.02,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],E2,831.091,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],F2,880.149,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],G2,842.79,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],H2,831.413,Water 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-Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],G3,851.477,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],H3,848.1179999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],I3,823.451,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],J3,852.947,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],K3,884.426,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],L3,832.8620000000001,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],M3,788.242,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],N3,853.1610000000001,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],O3,829.3879999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],P3,847.24,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],A4,798.9939999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],B4,848.975,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],C4,847.152,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],D4,861.222,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],E4,823.245,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],F4,822.374,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],G4,867.89,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],H4,851.58,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],I4,834.097,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],J4,812.83,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],K4,861.36,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],L4,790.202,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],M4,818.37,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],N4,811.5450000000001,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],O4,875.917,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],P4,811.105,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],A5,845.587,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],B5,871.74,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],C5,824.565,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],D5,793.534,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],E5,835.396,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],F5,858.627,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],G5,851.634,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],H5,882.293,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],I5,826.076,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],J5,854.65,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],K5,841.062,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],L5,862.0609999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],M5,834.2,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],N5,782.6220000000001,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],O5,877.639,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],P5,848.375,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],A6,855.529,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],B6,817.104,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],C6,831.7760000000001,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],D6,792.995,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],E6,894.233,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],F6,813.8009999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],G6,832.139,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],H6,832.266,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],I6,817.2339999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],J6,886.3679999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],K6,826.279,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],L6,844.238,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],M6,854.306,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],N6,830.6220000000001,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],O6,856.086,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],P6,829.8879999999999,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],A7,853.505,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],B7,847.1320000000001,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],C7,858.113,Water -Source[1],384PP_AQ_GP3,{A2;B2},Destination[1],D7,834.598,Water
--- a/test-data/instructor_volumes_warnings.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,12 +0,0 @@ -Parameter Min Max Plate -Mg-glutamate 0.4 plates_generator_destination_plate_1.json -CoA 0.052 plates_generator_destination_plate_1.json -3-PGA 6.0 plates_generator_destination_plate_1.json -NTP 0.3 plates_generator_destination_plate_1.json -NAD 0.066 plates_generator_destination_plate_1.json -Folinic acid 0.014 plates_generator_destination_plate_1.json -Spermidine 0.2 plates_generator_destination_plate_1.json -tRNA 0.04 plates_generator_destination_plate_1.json -Amino acids 0.3 plates_generator_destination_plate_1.json -CAMP 0.15 plates_generator_destination_plate_1.json -PEG 2.0 plates_generator_destination_plate_1.json
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/plates_designer.destination_plate.test-1.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,4 @@ +Well,Hela lysate,Access prot 50%,Reaction mix,RNA 1ug/uL,Water +A1,492.5,25.0,310.0,152.5,5020.0 +B1,970.0,165.0,257.5,112.5,4495.0 +C1,537.5,325.0,192.5,185.0,4760.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/plates_designer.destination_plate.test-2.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,7 @@ +Well,Hela lysate,Access prot 50%,Reaction mix,RNA 1ug/uL,Water +A1,492.5,25.0,310.0,152.5,4020.0 +B1,970.0,165.0,257.5,112.5,3495.0 +C1,537.5,325.0,192.5,185.0,3760.0 +D1,492.5,25.0,310.0,152.5,4020.0 +E1,970.0,165.0,257.5,112.5,3495.0 +F1,537.5,325.0,192.5,185.0,3760.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/plates_designer.source_plate.test-1.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,6 @@ +Well,Access prot 50%,Hela lysate,RNA 1ug/uL,Reaction mix,Water +A1,0.0,22000.0,0.0,0.0,0.0 +B1,20515.0,0.0,0.0,0.0,0.0 +C1,0.0,0.0,0.0,20760.0,0.0 +D1,0.0,0.0,20450.0,0.0,0.0 +E1,0.0,0.0,0.0,0.0,34275.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/plates_designer.source_plate.test-2.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,7 @@ +Well,Access prot 50%,Hela lysate,RNA 1ug/uL,Reaction mix,Water +A1,0.0,3000.0,0.0,0.0,0.0 +B1,0.0,1060.0,0.0,0.0,0.0 +C1,21030.0,0.0,0.0,0.0,0.0 +D1,0.0,0.0,0.0,1530.0,0.0 +E1,0.0,0.0,920.0,0.0,0.0 +F1,0.0,0.0,0.0,0.0,42550.0
--- a/test-data/plates_generator_destination_plate_1.test-1.json Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -{ - "Dimensions": "16x24", - "deadVolume": 0, - "Well capacity": 60000, - "Current well": "E7", - "Parameters": [ - "Spermidine", - "CAMP", - "Extract", - "CoA", - "HEPES", - "Folinic acid", - "k-glutamate", - "PEG", - "Mg-glutamate", - "Promoter", - "RBS", - "Amino acids", - "NTP", - "Water", - "NAD", - "3-PGA", - "tRNA" - ], - "Wells": "plates_generator_destination_plate_1.tsv" -}
--- a/test-data/plates_generator_destination_plate_1.test-1.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,101 +0,0 @@ -Well Mg-glutamate k-glutamate CoA 3-PGA NTP NAD Folinic acid Spermidine tRNA Amino acids CAMP Extract HEPES PEG Promoter RBS Water -A1 0.4 44.8 0.0 21.6 0.6 0.0 0.049 0.2 0.112 1.2 0.15 30.0 50.0 2.0 10.0 10.0 828.889 -B1 4.0 32.0 0.104 6.0 0.3 0.264 0.014 0.56 0.08 0.3 0.6 30.0 50.0 2.0 10.0 10.0 853.778 -C1 4.0 0.0 0.146 0.0 0.0 0.132 0.027 0.8 0.04 0.6 0.75 30.0 50.0 2.0 10.0 10.0 891.505 -D1 0.0 32.0 0.052 6.0 1.08 0.132 0.054 0.0 0.144 1.5 0.6 30.0 50.0 2.0 10.0 10.0 856.438 -E1 2.0 64.0 0.0 12.0 1.5 0.066 0.044 0.64 0.16 0.3 0.3 30.0 50.0 2.0 10.0 10.0 816.99 -F1 0.4 80.0 0.0 30.0 0.84 0.066 0.038 0.4 0.0 1.2 0.48 30.0 50.0 2.0 10.0 10.0 784.576 -G1 2.0 51.2 0.208 12.0 0.3 0.066 0.038 0.56 0.08 1.2 0.3 30.0 50.0 2.0 10.0 10.0 830.048 -H1 2.0 32.0 0.104 24.0 1.5 0.33 0.014 0.8 0.08 0.3 0.15 30.0 50.0 2.0 10.0 10.0 836.722 -I1 0.0 44.8 0.208 21.6 1.2 0.238 0.038 0.2 0.0 0.96 0.3 30.0 50.0 2.0 10.0 10.0 828.456 -J1 2.0 16.0 0.208 24.0 0.84 0.264 0.014 1.0 0.04 0.84 0.75 30.0 50.0 2.0 10.0 10.0 852.044 -K1 1.2 57.6 0.0 24.0 0.96 0.132 0.027 0.2 0.112 0.3 0.3 30.0 50.0 2.0 10.0 10.0 813.169 -L1 1.2 16.0 0.166 21.6 0.3 0.066 0.068 0.4 0.144 0.6 0.3 30.0 50.0 2.0 10.0 10.0 857.156 -M1 1.2 16.0 0.26 19.2 0.96 0.066 0.044 0.4 0.08 1.2 0.15 30.0 50.0 2.0 10.0 10.0 858.44 -N1 0.4 80.0 0.104 30.0 0.84 0.33 0.068 0.8 0.112 1.08 0.0 30.0 50.0 2.0 10.0 10.0 784.2660000000001 -O1 4.0 32.0 0.104 24.0 1.2 0.0 0.038 0.2 0.112 0.3 0.54 30.0 50.0 2.0 10.0 10.0 835.506 -P1 4.0 64.0 0.104 24.0 1.08 0.185 0.049 0.72 0.08 0.3 0.42 30.0 50.0 2.0 10.0 10.0 803.062 -A2 1.2 0.0 0.208 0.0 1.08 0.238 0.049 0.56 0.2 0.96 0.75 30.0 50.0 2.0 10.0 10.0 892.755 -B2 2.0 16.0 0.208 6.0 0.84 0.211 0.038 0.2 0.128 1.2 0.6 30.0 50.0 2.0 10.0 10.0 870.575 -C2 4.0 64.0 0.146 16.8 0.96 0.132 0.049 0.4 0.0 0.84 0.42 30.0 50.0 2.0 10.0 10.0 810.2529999999999 -D2 1.2 44.8 0.208 12.0 1.08 0.264 0.068 0.0 0.16 0.6 0.6 30.0 50.0 2.0 10.0 10.0 837.02 -E2 2.0 44.8 0.26 16.8 1.2 0.185 0.044 0.72 0.0 0.6 0.3 30.0 50.0 2.0 10.0 10.0 831.091 -F2 4.0 0.0 0.052 12.0 0.6 0.132 0.027 0.4 0.04 0.6 0.0 30.0 50.0 2.0 10.0 10.0 880.149 -G2 4.0 32.0 0.052 16.8 1.2 0.264 0.014 0.2 0.08 0.3 0.3 30.0 50.0 2.0 10.0 10.0 842.79 -H2 2.0 44.8 0.052 16.8 0.3 0.066 0.049 0.8 0.04 1.2 0.48 30.0 50.0 2.0 10.0 10.0 831.413 -I2 4.0 80.0 0.0 16.8 0.3 0.264 0.054 0.56 0.16 0.6 0.15 30.0 50.0 2.0 10.0 10.0 795.1120000000001 -J2 1.2 44.8 0.0 6.0 0.6 0.211 0.054 0.56 0.144 0.0 0.15 30.0 50.0 2.0 10.0 10.0 844.281 -K2 2.0 0.0 0.146 21.6 1.2 0.0 0.027 0.0 0.04 0.84 0.6 30.0 50.0 2.0 10.0 10.0 871.547 -L2 0.4 16.0 0.166 6.0 0.3 0.33 0.068 1.0 0.16 0.6 0.54 30.0 50.0 2.0 10.0 10.0 872.436 -M2 1.2 57.6 0.208 24.0 0.3 0.211 0.038 0.4 0.2 1.08 0.75 30.0 50.0 2.0 10.0 10.0 812.0129999999999 -N2 0.4 80.0 0.052 30.0 0.3 0.264 0.0 0.72 0.128 1.08 0.0 30.0 50.0 2.0 10.0 10.0 785.056 -O2 2.0 32.0 0.146 12.0 1.2 0.211 0.054 0.64 0.08 0.96 0.6 30.0 50.0 2.0 10.0 10.0 848.1089999999999 -P2 1.2 51.2 0.146 12.0 0.6 0.132 0.014 0.2 0.0 1.08 0.54 30.0 50.0 2.0 10.0 10.0 830.8879999999999 -A3 2.0 64.0 0.052 30.0 1.2 0.066 0.068 0.8 0.128 0.3 0.15 30.0 50.0 2.0 10.0 10.0 799.236 -B3 4.0 0.0 0.208 0.0 0.3 0.0 0.044 0.0 0.16 0.6 0.15 30.0 50.0 2.0 10.0 10.0 892.538 -C3 1.2 64.0 0.26 0.0 0.0 0.264 0.0 0.56 0.04 1.2 0.54 30.0 50.0 2.0 10.0 10.0 829.9359999999999 -D3 2.0 64.0 0.052 6.0 0.96 0.185 0.038 0.0 0.112 0.84 0.6 30.0 50.0 2.0 10.0 10.0 823.213 -E3 4.0 64.0 0.187 6.0 0.3 0.185 0.027 0.4 0.112 0.3 0.15 30.0 50.0 2.0 10.0 10.0 822.3389999999999 -F3 1.2 51.2 0.052 24.0 0.6 0.185 0.027 0.4 0.08 0.6 0.3 30.0 50.0 2.0 10.0 10.0 819.356 -G3 4.0 16.0 0.104 24.0 0.0 0.185 0.054 0.4 0.04 1.2 0.54 30.0 50.0 2.0 10.0 10.0 851.477 -H3 2.0 32.0 0.26 12.0 1.08 0.238 0.044 0.2 0.08 1.5 0.48 30.0 50.0 2.0 10.0 10.0 848.1179999999999 -I3 2.0 64.0 0.187 6.0 0.6 0.33 0.038 0.8 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16.8 1.2 0.066 0.068 0.4 0.16 0.3 0.48 30.0 50.0 2.0 10.0 10.0 861.222 -E4 1.2 51.2 0.187 19.2 1.5 0.264 0.014 0.0 0.2 0.84 0.15 30.0 50.0 2.0 10.0 10.0 823.245 -F4 2.0 64.0 0.146 6.0 1.5 0.066 0.014 0.56 0.2 0.84 0.3 30.0 50.0 2.0 10.0 10.0 822.374 -G4 0.4 16.0 0.104 12.0 0.3 0.132 0.054 0.0 0.04 0.6 0.48 30.0 50.0 2.0 10.0 10.0 867.89 -H4 4.0 16.0 0.146 24.0 0.6 0.0 0.014 0.8 0.08 0.3 0.48 30.0 50.0 2.0 10.0 10.0 851.58 -I4 4.0 44.8 0.052 12.0 0.96 0.211 0.0 0.0 0.08 1.5 0.3 30.0 50.0 2.0 10.0 10.0 834.097 -J4 4.0 57.6 0.166 19.2 0.96 0.066 0.0 0.8 0.128 1.5 0.75 30.0 50.0 2.0 10.0 10.0 812.83 -K4 0.4 16.0 0.166 16.8 0.3 0.0 0.014 1.0 0.16 1.5 0.3 30.0 50.0 2.0 10.0 10.0 861.36 -L4 2.0 80.0 0.0 24.0 0.0 0.264 0.014 0.8 0.0 0.3 0.42 30.0 50.0 2.0 10.0 10.0 790.202 -M4 2.0 57.6 0.052 16.8 0.6 0.066 0.014 0.72 0.128 1.5 0.15 30.0 50.0 2.0 10.0 10.0 818.37 -N4 2.0 57.6 0.104 24.0 0.3 0.132 0.027 0.8 0.112 0.96 0.42 30.0 50.0 2.0 10.0 10.0 811.5450000000001 -O4 0.0 0.0 0.187 19.2 0.84 0.066 0.0 0.2 0.0 0.84 0.75 30.0 50.0 2.0 10.0 10.0 875.917 -P4 2.0 64.0 0.26 16.8 0.96 0.264 0.027 0.64 0.144 1.2 0.6 30.0 50.0 2.0 10.0 10.0 811.105 -A5 1.2 32.0 0.104 16.8 0.6 0.132 0.027 0.72 0.08 0.6 0.15 30.0 50.0 2.0 10.0 10.0 845.587 -B5 1.2 16.0 0.052 6.0 0.84 0.33 0.014 0.0 0.144 1.08 0.6 30.0 50.0 2.0 10.0 10.0 871.74 -C5 1.2 64.0 0.208 6.0 0.6 0.238 0.049 0.72 0.0 0.0 0.42 30.0 50.0 2.0 10.0 10.0 824.565 -D5 2.0 80.0 0.052 19.2 1.5 0.185 0.027 0.4 0.112 0.84 0.15 30.0 50.0 2.0 10.0 10.0 793.534 -E5 2.0 57.6 0.052 0.0 1.08 0.238 0.014 0.64 0.08 0.6 0.3 30.0 50.0 2.0 10.0 10.0 835.396 -F5 2.0 16.0 0.166 19.2 0.0 0.185 0.054 0.56 0.128 1.08 0.0 30.0 50.0 2.0 10.0 10.0 858.627 -G5 0.0 32.0 0.104 12.0 0.84 0.0 0.038 0.64 0.144 0.0 0.6 30.0 50.0 2.0 10.0 10.0 851.634 -H5 0.4 0.0 0.208 12.0 1.2 0.185 0.054 0.2 0.2 0.96 0.3 30.0 50.0 2.0 10.0 10.0 882.293 -I5 2.0 44.8 0.26 21.6 0.0 0.33 0.014 0.8 0.2 1.5 0.42 30.0 50.0 2.0 10.0 10.0 826.076 -J5 2.0 32.0 0.052 6.0 1.5 0.132 0.014 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1.5 0.211 0.068 1.0 0.08 0.3 0.0 30.0 50.0 2.0 10.0 10.0 894.233 -F6 0.4 51.2 0.26 30.0 1.2 0.185 0.054 0.4 0.2 0.3 0.0 30.0 50.0 2.0 10.0 10.0 813.8009999999999 -G6 0.4 51.2 0.0 12.0 0.96 0.211 0.038 0.64 0.112 0.3 0.0 30.0 50.0 2.0 10.0 10.0 832.139 -H6 1.2 44.8 0.0 16.8 0.84 0.33 0.014 0.8 0.2 0.6 0.15 30.0 50.0 2.0 10.0 10.0 832.266 -I6 2.0 64.0 0.052 12.0 0.84 0.0 0.014 0.2 0.04 1.2 0.42 30.0 50.0 2.0 10.0 10.0 817.2339999999999 -J6 2.0 0.0 0.0 6.0 1.2 0.066 0.038 1.0 0.128 0.6 0.6 30.0 50.0 2.0 10.0 10.0 886.3679999999999 -K6 1.2 44.8 0.146 21.6 1.08 0.066 0.049 0.64 0.04 1.5 0.6 30.0 50.0 2.0 10.0 10.0 826.279 -L6 1.2 44.8 0.166 6.0 0.3 0.066 0.0 0.4 0.08 0.6 0.15 30.0 50.0 2.0 10.0 10.0 844.238 -M6 0.4 16.0 0.146 24.0 0.6 0.0 0.068 0.4 0.16 1.5 0.42 30.0 50.0 2.0 10.0 10.0 854.306 -N6 2.0 64.0 0.104 0.0 0.3 0.33 0.0 0.2 0.144 0.3 0.0 30.0 50.0 2.0 10.0 10.0 830.6220000000001 -O6 1.2 32.0 0.208 6.0 0.84 0.132 0.054 0.72 0.16 0.6 0.0 30.0 50.0 2.0 10.0 10.0 856.086 -P6 4.0 44.8 0.146 16.8 0.0 0.132 0.054 1.0 0.04 0.84 0.3 30.0 50.0 2.0 10.0 10.0 829.8879999999999 -A7 4.0 32.0 0.052 6.0 0.3 0.185 0.038 0.4 0.08 0.84 0.6 30.0 50.0 2.0 10.0 10.0 853.505 -B7 2.0 16.0 0.208 30.0 1.5 0.066 0.044 0.56 0.04 0.3 0.15 30.0 50.0 2.0 10.0 10.0 847.1320000000001 -C7 0.4 16.0 0.187 21.6 0.6 0.066 0.014 0.4 0.2 0.0 0.42 30.0 50.0 2.0 10.0 10.0 858.113 -D7 4.0 51.2 0.104 6.0 1.2 0.238 0.0 0.2 0.04 0.0 0.42 30.0 50.0 2.0 10.0 10.0 834.598
--- a/test-data/plates_generator_destination_plate_1.test-2.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,101 +0,0 @@ -Well Mg-glutamate k-glutamate CoA 3-PGA NTP NAD Folinic acid Spermidine tRNA Amino acids CAMP Extract HEPES PEG Promoter RBS Water -C3 0.4 44.8 0.0 21.6 0.6 0.0 0.049 0.2 0.112 1.2 0.15 30.0 50.0 2.0 10.0 10.0 828.889 -D3 4.0 32.0 0.104 6.0 0.3 0.264 0.014 0.56 0.08 0.3 0.6 30.0 50.0 2.0 10.0 10.0 853.778 -E3 4.0 0.0 0.146 0.0 0.0 0.132 0.027 0.8 0.04 0.6 0.75 30.0 50.0 2.0 10.0 10.0 891.505 -F3 0.0 32.0 0.052 6.0 1.08 0.132 0.054 0.0 0.144 1.5 0.6 30.0 50.0 2.0 10.0 10.0 856.438 -G3 2.0 64.0 0.0 12.0 1.5 0.066 0.044 0.64 0.16 0.3 0.3 30.0 50.0 2.0 10.0 10.0 816.99 -H3 0.4 80.0 0.0 30.0 0.84 0.066 0.038 0.4 0.0 1.2 0.48 30.0 50.0 2.0 10.0 10.0 784.576 -I3 2.0 51.2 0.208 12.0 0.3 0.066 0.038 0.56 0.08 1.2 0.3 30.0 50.0 2.0 10.0 10.0 830.048 -J3 2.0 32.0 0.104 24.0 1.5 0.33 0.014 0.8 0.08 0.3 0.15 30.0 50.0 2.0 10.0 10.0 836.722 -K3 0.0 44.8 0.208 21.6 1.2 0.238 0.038 0.2 0.0 0.96 0.3 30.0 50.0 2.0 10.0 10.0 828.456 -L3 2.0 16.0 0.208 24.0 0.84 0.264 0.014 1.0 0.04 0.84 0.75 30.0 50.0 2.0 10.0 10.0 852.044 -M3 1.2 57.6 0.0 24.0 0.96 0.132 0.027 0.2 0.112 0.3 0.3 30.0 50.0 2.0 10.0 10.0 813.169 -N3 1.2 16.0 0.166 21.6 0.3 0.066 0.068 0.4 0.144 0.6 0.3 30.0 50.0 2.0 10.0 10.0 857.156 -O3 1.2 16.0 0.26 19.2 0.96 0.066 0.044 0.4 0.08 1.2 0.15 30.0 50.0 2.0 10.0 10.0 858.44 -P3 0.4 80.0 0.104 30.0 0.84 0.33 0.068 0.8 0.112 1.08 0.0 30.0 50.0 2.0 10.0 10.0 784.2660000000001 -A4 4.0 32.0 0.104 24.0 1.2 0.0 0.038 0.2 0.112 0.3 0.54 30.0 50.0 2.0 10.0 10.0 835.506 -B4 4.0 64.0 0.104 24.0 1.08 0.185 0.049 0.72 0.08 0.3 0.42 30.0 50.0 2.0 10.0 10.0 803.062 -C4 1.2 0.0 0.208 0.0 1.08 0.238 0.049 0.56 0.2 0.96 0.75 30.0 50.0 2.0 10.0 10.0 892.755 -D4 2.0 16.0 0.208 6.0 0.84 0.211 0.038 0.2 0.128 1.2 0.6 30.0 50.0 2.0 10.0 10.0 870.575 -E4 4.0 64.0 0.146 16.8 0.96 0.132 0.049 0.4 0.0 0.84 0.42 30.0 50.0 2.0 10.0 10.0 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10.0 785.056 -A5 2.0 32.0 0.146 12.0 1.2 0.211 0.054 0.64 0.08 0.96 0.6 30.0 50.0 2.0 10.0 10.0 848.1089999999999 -B5 1.2 51.2 0.146 12.0 0.6 0.132 0.014 0.2 0.0 1.08 0.54 30.0 50.0 2.0 10.0 10.0 830.8879999999999 -C5 2.0 64.0 0.052 30.0 1.2 0.066 0.068 0.8 0.128 0.3 0.15 30.0 50.0 2.0 10.0 10.0 799.236 -D5 4.0 0.0 0.208 0.0 0.3 0.0 0.044 0.0 0.16 0.6 0.15 30.0 50.0 2.0 10.0 10.0 892.538 -E5 1.2 64.0 0.26 0.0 0.0 0.264 0.0 0.56 0.04 1.2 0.54 30.0 50.0 2.0 10.0 10.0 829.9359999999999 -F5 2.0 64.0 0.052 6.0 0.96 0.185 0.038 0.0 0.112 0.84 0.6 30.0 50.0 2.0 10.0 10.0 823.213 -G5 4.0 64.0 0.187 6.0 0.3 0.185 0.027 0.4 0.112 0.3 0.15 30.0 50.0 2.0 10.0 10.0 822.3389999999999 -H5 1.2 51.2 0.052 24.0 0.6 0.185 0.027 0.4 0.08 0.6 0.3 30.0 50.0 2.0 10.0 10.0 819.356 -I5 4.0 16.0 0.104 24.0 0.0 0.185 0.054 0.4 0.04 1.2 0.54 30.0 50.0 2.0 10.0 10.0 851.477 -J5 2.0 32.0 0.26 12.0 1.08 0.238 0.044 0.2 0.08 1.5 0.48 30.0 50.0 2.0 10.0 10.0 848.1179999999999 -K5 2.0 64.0 0.187 6.0 0.6 0.33 0.038 0.8 0.144 0.3 0.15 30.0 50.0 2.0 10.0 10.0 823.451 -L5 4.0 32.0 0.104 6.0 0.84 0.132 0.027 0.2 0.04 0.96 0.75 30.0 50.0 2.0 10.0 10.0 852.947 -M5 4.0 0.0 0.104 6.0 0.6 0.33 0.0 1.0 0.16 1.08 0.3 30.0 50.0 2.0 10.0 10.0 884.426 -N5 0.4 51.2 0.26 12.0 0.0 0.264 0.014 0.4 0.0 0.3 0.3 30.0 50.0 2.0 10.0 10.0 832.8620000000001 -O5 2.0 80.0 0.187 24.0 0.6 0.264 0.027 0.8 0.08 1.2 0.6 30.0 50.0 2.0 10.0 10.0 788.242 -P5 2.0 16.0 0.26 24.0 0.6 0.132 0.027 1.0 0.04 0.3 0.48 30.0 50.0 2.0 10.0 10.0 853.1610000000001 -A6 2.0 57.6 0.26 6.0 1.08 0.238 0.054 0.2 0.04 0.84 0.3 30.0 50.0 2.0 10.0 10.0 829.3879999999999 -B6 0.0 16.0 0.052 30.0 1.5 0.33 0.068 1.0 0.16 1.5 0.15 30.0 50.0 2.0 10.0 10.0 847.24 -C6 4.0 80.0 0.146 12.0 0.84 0.066 0.054 0.2 0.08 1.08 0.54 30.0 50.0 2.0 10.0 10.0 798.9939999999999 -D6 4.0 32.0 0.052 12.0 0.3 0.066 0.027 0.0 0.16 0.0 0.42 30.0 50.0 2.0 10.0 10.0 848.975 -E6 2.0 16.0 0.104 30.0 0.3 0.132 0.044 1.0 0.128 0.6 0.54 30.0 50.0 2.0 10.0 10.0 847.152 -F6 1.2 16.0 0.104 16.8 1.2 0.066 0.068 0.4 0.16 0.3 0.48 30.0 50.0 2.0 10.0 10.0 861.222 -G6 1.2 51.2 0.187 19.2 1.5 0.264 0.014 0.0 0.2 0.84 0.15 30.0 50.0 2.0 10.0 10.0 823.245 -H6 2.0 64.0 0.146 6.0 1.5 0.066 0.014 0.56 0.2 0.84 0.3 30.0 50.0 2.0 10.0 10.0 822.374 -I6 0.4 16.0 0.104 12.0 0.3 0.132 0.054 0.0 0.04 0.6 0.48 30.0 50.0 2.0 10.0 10.0 867.89 -J6 4.0 16.0 0.146 24.0 0.6 0.0 0.014 0.8 0.08 0.3 0.48 30.0 50.0 2.0 10.0 10.0 851.58 -K6 4.0 44.8 0.052 12.0 0.96 0.211 0.0 0.0 0.08 1.5 0.3 30.0 50.0 2.0 10.0 10.0 834.097 -L6 4.0 57.6 0.166 19.2 0.96 0.066 0.0 0.8 0.128 1.5 0.75 30.0 50.0 2.0 10.0 10.0 812.83 -M6 0.4 16.0 0.166 16.8 0.3 0.0 0.014 1.0 0.16 1.5 0.3 30.0 50.0 2.0 10.0 10.0 861.36 -N6 2.0 80.0 0.0 24.0 0.0 0.264 0.014 0.8 0.0 0.3 0.42 30.0 50.0 2.0 10.0 10.0 790.202 -O6 2.0 57.6 0.052 16.8 0.6 0.066 0.014 0.72 0.128 1.5 0.15 30.0 50.0 2.0 10.0 10.0 818.37 -P6 2.0 57.6 0.104 24.0 0.3 0.132 0.027 0.8 0.112 0.96 0.42 30.0 50.0 2.0 10.0 10.0 811.5450000000001 -A7 0.0 0.0 0.187 19.2 0.84 0.066 0.0 0.2 0.0 0.84 0.75 30.0 50.0 2.0 10.0 10.0 875.917 -B7 2.0 64.0 0.26 16.8 0.96 0.264 0.027 0.64 0.144 1.2 0.6 30.0 50.0 2.0 10.0 10.0 811.105 -C7 1.2 32.0 0.104 16.8 0.6 0.132 0.027 0.72 0.08 0.6 0.15 30.0 50.0 2.0 10.0 10.0 845.587 -D7 1.2 16.0 0.052 6.0 0.84 0.33 0.014 0.0 0.144 1.08 0.6 30.0 50.0 2.0 10.0 10.0 871.74 -E7 1.2 64.0 0.208 6.0 0.6 0.238 0.049 0.72 0.0 0.0 0.42 30.0 50.0 2.0 10.0 10.0 824.565 -F7 2.0 80.0 0.052 19.2 1.5 0.185 0.027 0.4 0.112 0.84 0.15 30.0 50.0 2.0 10.0 10.0 793.534 -G7 2.0 57.6 0.052 0.0 1.08 0.238 0.014 0.64 0.08 0.6 0.3 30.0 50.0 2.0 10.0 10.0 835.396 -H7 2.0 16.0 0.166 19.2 0.0 0.185 0.054 0.56 0.128 1.08 0.0 30.0 50.0 2.0 10.0 10.0 858.627 -I7 0.0 32.0 0.104 12.0 0.84 0.0 0.038 0.64 0.144 0.0 0.6 30.0 50.0 2.0 10.0 10.0 851.634 -J7 0.4 0.0 0.208 12.0 1.2 0.185 0.054 0.2 0.2 0.96 0.3 30.0 50.0 2.0 10.0 10.0 882.293 -K7 2.0 44.8 0.26 21.6 0.0 0.33 0.014 0.8 0.2 1.5 0.42 30.0 50.0 2.0 10.0 10.0 826.076 -L7 2.0 32.0 0.052 6.0 1.5 0.132 0.014 0.4 0.112 0.84 0.3 30.0 50.0 2.0 10.0 10.0 854.65 -M7 2.0 32.0 0.166 19.2 1.5 0.238 0.014 0.64 0.16 0.6 0.42 30.0 50.0 2.0 10.0 10.0 841.062 -N7 1.2 32.0 0.146 0.0 0.0 0.185 0.068 0.56 0.04 1.2 0.54 30.0 50.0 2.0 10.0 10.0 862.0609999999999 -O7 2.0 57.6 0.052 0.0 1.2 0.211 0.027 0.72 0.04 1.2 0.75 30.0 50.0 2.0 10.0 10.0 834.2 -P7 4.0 80.0 0.052 30.0 0.6 0.0 0.054 0.56 0.112 0.0 0.0 30.0 50.0 2.0 10.0 10.0 782.6220000000001 -A8 0.4 16.0 0.187 0.0 1.2 0.264 0.0 0.2 0.16 1.2 0.75 30.0 50.0 2.0 10.0 10.0 877.639 -B8 4.0 32.0 0.104 12.0 0.3 0.132 0.027 0.8 0.112 0.0 0.15 30.0 50.0 2.0 10.0 10.0 848.375 -C8 4.0 16.0 0.208 21.6 0.0 0.264 0.049 0.2 0.0 0.0 0.15 30.0 50.0 2.0 10.0 10.0 855.529 -D8 2.0 64.0 0.187 12.0 0.6 0.132 0.027 0.2 0.04 0.96 0.75 30.0 50.0 2.0 10.0 10.0 817.104 -E8 2.0 32.0 0.104 30.0 0.3 0.066 0.044 0.56 0.04 0.96 0.15 30.0 50.0 2.0 10.0 10.0 831.7760000000001 -F8 4.0 80.0 0.166 19.2 0.6 0.132 0.027 0.2 0.2 0.0 0.48 30.0 50.0 2.0 10.0 10.0 792.995 -G8 0.4 0.0 0.208 0.0 1.5 0.211 0.068 1.0 0.08 0.3 0.0 30.0 50.0 2.0 10.0 10.0 894.233 -H8 0.4 51.2 0.26 30.0 1.2 0.185 0.054 0.4 0.2 0.3 0.0 30.0 50.0 2.0 10.0 10.0 813.8009999999999 -I8 0.4 51.2 0.0 12.0 0.96 0.211 0.038 0.64 0.112 0.3 0.0 30.0 50.0 2.0 10.0 10.0 832.139 -J8 1.2 44.8 0.0 16.8 0.84 0.33 0.014 0.8 0.2 0.6 0.15 30.0 50.0 2.0 10.0 10.0 832.266 -K8 2.0 64.0 0.052 12.0 0.84 0.0 0.014 0.2 0.04 1.2 0.42 30.0 50.0 2.0 10.0 10.0 817.2339999999999 -L8 2.0 0.0 0.0 6.0 1.2 0.066 0.038 1.0 0.128 0.6 0.6 30.0 50.0 2.0 10.0 10.0 886.3679999999999 -M8 1.2 44.8 0.146 21.6 1.08 0.066 0.049 0.64 0.04 1.5 0.6 30.0 50.0 2.0 10.0 10.0 826.279 -N8 1.2 44.8 0.166 6.0 0.3 0.066 0.0 0.4 0.08 0.6 0.15 30.0 50.0 2.0 10.0 10.0 844.238 -O8 0.4 16.0 0.146 24.0 0.6 0.0 0.068 0.4 0.16 1.5 0.42 30.0 50.0 2.0 10.0 10.0 854.306 -P8 2.0 64.0 0.104 0.0 0.3 0.33 0.0 0.2 0.144 0.3 0.0 30.0 50.0 2.0 10.0 10.0 830.6220000000001 -A9 1.2 32.0 0.208 6.0 0.84 0.132 0.054 0.72 0.16 0.6 0.0 30.0 50.0 2.0 10.0 10.0 856.086 -B9 4.0 44.8 0.146 16.8 0.0 0.132 0.054 1.0 0.04 0.84 0.3 30.0 50.0 2.0 10.0 10.0 829.8879999999999 -C9 4.0 32.0 0.052 6.0 0.3 0.185 0.038 0.4 0.08 0.84 0.6 30.0 50.0 2.0 10.0 10.0 853.505 -D9 2.0 16.0 0.208 30.0 1.5 0.066 0.044 0.56 0.04 0.3 0.15 30.0 50.0 2.0 10.0 10.0 847.1320000000001 -E9 0.4 16.0 0.187 21.6 0.6 0.066 0.014 0.4 0.2 0.0 0.42 30.0 50.0 2.0 10.0 10.0 858.113 -F9 4.0 51.2 0.104 6.0 1.2 0.238 0.0 0.2 0.04 0.0 0.42 30.0 50.0 2.0 10.0 10.0 834.598
--- a/test-data/plates_generator_source_plate_1.test-1.json Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -{ - "Dimensions": "16x24", - "deadVolume": 15000, - "Well capacity": 60000, - "Current well": "C2", - "Parameters": [ - "Spermidine", - "CAMP", - "Extract", - "CoA", - "HEPES", - "Folinic acid", - "k-glutamate", - "PEG", - "Mg-glutamate", - "Promoter", - "RBS", - "Amino acids", - "NTP", - "Water", - "NAD", - "3-PGA", - "tRNA" - ], - "Wells": "plates_generator_source_plate_1.tsv" -}
--- a/test-data/plates_generator_source_plate_1.test-1.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,19 +0,0 @@ -Well Mg-glutamate k-glutamate CoA 3-PGA NTP NAD Folinic acid Spermidine tRNA Amino acids CAMP Extract HEPES PEG Promoter RBS Water -A1 60000.0 -B1 60000.0 -C1 60000.0 -D1 60000.0 -E1 60000.0 -F1 60000.0 -G1 60000.0 -H1 60000.0 -I1 60000.0 -J1 60000.0 -K1 60000.0 -L1 60000.0 -M1 60000.0 -N1 60000.0 -O1 60000.0 -P1 60000.0 -A2 60000.0 -B2 60000.0
--- a/test-data/plates_generator_source_plate_1.test-2.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,19 +0,0 @@ -Well Mg-glutamate k-glutamate CoA 3-PGA NTP NAD Folinic acid Spermidine tRNA Amino acids CAMP Extract HEPES PEG Promoter RBS Water -A2 60000.0 -B2 60000.0 -C2 60000.0 -D2 60000.0 -E2 60000.0 -F2 60000.0 -G2 60000.0 -H2 60000.0 -I2 60000.0 -J2 60000.0 -K2 60000.0 -L2 60000.0 -M2 60000.0 -N2 60000.0 -O2 2500.0 -P2 2500.0 -Q2 60000.0 -R2 60000.0
--- a/test-data/plates_generator_volumes_summary.test-1.tsv Wed Feb 14 15:25:48 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,18 +0,0 @@ -Factor Sample+deadVolumes -Mg-glutamate 60000 -k-glutamate 60000 -CoA 60000 -3-PGA 60000 -NTP 60000 -NAD 60000 -Folinic acid 60000 -Spermidine 60000 -tRNA 60000 -Amino acids 60000 -CAMP 60000 -Extract 60000 -HEPES 60000 -PEG 60000 -Promoter 60000 -RBS 60000 -Water 120000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sampling.test-1.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,4 @@ +Hela lysate,Access prot 50%,Reaction mix,RNA 1ug/uL +492.5,25.0,310.0,152.5 +970.0,165.0,257.5,112.5 +537.5,325.0,192.5,185.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/source_plate.csv Tue Jul 23 13:59:02 2024 +0000 @@ -0,0 +1,6 @@ +Well,Access prot 50%,Hela lysate,RNA 1ug/uL,Reaction mix,Water +A1,0.0,22000.0,0.0,0.0,0.0 +B1,20515.0,0.0,0.0,0.0,0.0 +C1,0.0,0.0,0.0,20760.0,0.0 +D1,0.0,0.0,20450.0,0.0,0.0 +E1,0.0,0.0,0.0,0.0,34275.0