Mercurial > repos > tduigou > neo4jsbml
changeset 4:94863d48d5da draft
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 513db7f056db275f3f5d8d1337d39ff66012d89f
| author | tduigou |
|---|---|
| date | Mon, 09 Oct 2023 13:35:34 +0000 |
| parents | 7a8d6e36f5af |
| children | 6941e7dc5117 |
| files | neo4jsbml.xml |
| diffstat | 1 files changed, 15 insertions(+), 10 deletions(-) [+] |
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--- a/neo4jsbml.xml Mon Oct 09 12:05:30 2023 +0000 +++ b/neo4jsbml.xml Mon Oct 09 13:35:34 2023 +0000 @@ -8,14 +8,19 @@ </requirements> <command detect_errors="exit_code"><![CDATA[ python -m neo4jsbml - --input-auradb-file '$input_auradb_file' - --input-file-sbml '$input_file_sbml' - --input-modelisation-json '$input_modelisation_json' + --input-auradb-file '$input_auradb_file' + --input-file-sbml '$input_file_sbml' + #if str($input_tag_str) != "" + --input-tag-str '$input_tag_str' + #end if + --input-modelisation-json '$input_modelisation_json' | tee '$output_log' ]]></command> <inputs> <param name="input_auradb_file" type="data" format="txt" label="Config file provided by AuraDB"/> <param name="input_file_sbml" type="data" format="sbml" label="SBML model"/> - <param name="input_tag_str" type="text" label="Identifier of the model"/> + <param name="input_tag_str" type="text" label="Identifier of the model"> + <validator type="regex" message="No special characters allowed">^(?:[\w-]*)$</validator> + </param> <param name="input_modelisation_json" type="data" format="json" label="Arrow's schema"/> </inputs> <outputs> @@ -50,12 +55,12 @@ ------ Database parameters -| **Protocol**: choose the protocol (default: neo4j) -| **Url of the database**: define the url of the database -| **Port of the database**: define the port of the database (default: 7687) -| **Username of the database**: User name of the database -| **Password of the database**: file with the password -| **Database name**: database name +- **Protocol**: choose the protocol (default: neo4j) +- **Url of the database**: define the url of the database +- **Port of the database**: define the port of the database (default: 7687) +- **Username of the database**: User name of the database +- **Password of the database**: file with the password +- **Database name**: database name Input - **SBML model**: SBML model