Mercurial > repos > tduigou > neo4jsbml
changeset 5:6941e7dc5117 draft
planemo upload for repository https://github.com/brsynth/neo4jsbml commit 8dd843aac9f23dd9e0036c48914f20889d894ecc
| author | tduigou |
|---|---|
| date | Mon, 09 Oct 2023 14:07:56 +0000 |
| parents | 94863d48d5da |
| children | f2ababe65b04 |
| files | neo4jsbml.xml |
| diffstat | 1 files changed, 4 insertions(+), 12 deletions(-) [+] |
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--- a/neo4jsbml.xml Mon Oct 09 13:35:34 2023 +0000 +++ b/neo4jsbml.xml Mon Oct 09 14:07:56 2023 +0000 @@ -13,7 +13,7 @@ #if str($input_tag_str) != "" --input-tag-str '$input_tag_str' #end if - --input-modelisation-json '$input_modelisation_json' | tee '$output_log' + --input-modelisation-json '$input_modelisation_json' | tee '$output' ]]></command> <inputs> <param name="input_auradb_file" type="data" format="txt" label="Config file provided by AuraDB"/> @@ -24,7 +24,7 @@ <param name="input_modelisation_json" type="data" format="json" label="Arrow's schema"/> </inputs> <outputs> - <data name="output_log" format="txt" label="${tool.name} - log" /> + <data name="output" format="txt" label="${tool.name} - log" /> </outputs> <help><![CDATA[ Neo4jSbml @@ -54,17 +54,9 @@ Inputs ------ -Database parameters -- **Protocol**: choose the protocol (default: neo4j) -- **Url of the database**: define the url of the database -- **Port of the database**: define the port of the database (default: 7687) -- **Username of the database**: User name of the database -- **Password of the database**: file with the password -- **Database name**: database name - -Input +- **AuraDB config like**: a txt file with these variables NEO4J_URI, NEO4J_USERNAME, NEO4J_PASSWORD and AURA_INSTANCENAME. One per line like: NEO4J_USERNAME=neo4j - **SBML model**: SBML model -- **Identifier of the model**: Associate an ID to the nodes +- **Identifier of the model**: Associate an ID to the nodes (optional) - **Arrow's schema**: Schema created with Arrow Ouput