Mercurial > repos > tduigou > rptools_rpcompletion
changeset 7:1b76c07c3156 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 4ae625e3ff1de2034c8d29ad26434f41e3230c2c-dirty
| author | tduigou |
|---|---|
| date | Fri, 24 Oct 2025 09:46:35 +0000 |
| parents | 64ccaeec8554 |
| children | |
| files | macros.xml rpcompletion.xml |
| diffstat | 2 files changed, 4 insertions(+), 10 deletions(-) [+] |
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--- a/macros.xml Thu Oct 23 14:39:36 2025 +0000 +++ b/macros.xml Fri Oct 24 09:46:35 2025 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">6.7.1</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
--- a/rpcompletion.xml Thu Oct 23 14:39:36 2025 +0000 +++ b/rpcompletion.xml Fri Oct 24 09:46:35 2025 +0000 @@ -13,14 +13,8 @@ description="The sink file is empty or not found" /> </stdio> <command detect_errors="exit_code"><![CDATA[ - #import os - #if "TMPDIR" in os.environ - #set tmpdir=os.environ["TMPDIR"]/rr_cache - mkdir -p '$tmpdir' && - #else - #set tmpdir="." - #end if - + TMPDIR="\${TMPDIR:-.}/rr_cache" && + mkdir -p "\${TMPDIR}" && #if str($sink.cond) == 'empty' echo '"Name","InChI"' > empty_sink.csv && #set sinkfile='empty_sink.csv' @@ -44,7 +38,7 @@ #if not $sink.error_codes --silent #end if - --cache-dir '$tmpdir' + --cache-dir "\${TMPDIR}" ]]></command> <inputs> <param name="rp2paths_pathways" type="data" format="csv" label="RP2paths pathways" />