Mercurial > repos > tduigou > rptools_rpcompletion
changeset 4:e59d28e31f88 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 96a30e92eab3144b924fdba7b63be10b218160a7
| author | tduigou |
|---|---|
| date | Wed, 24 Jul 2024 08:42:16 +0000 |
| parents | 7f684f4519f1 |
| children | ec5e25d1a3f1 |
| files | rpcompletion.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/rpcompletion.xml Fri Dec 01 14:29:29 2023 +0000 +++ b/rpcompletion.xml Wed Jul 24 08:42:16 2024 +0000 @@ -22,7 +22,7 @@ ]]></command> <inputs> <param name="rp2paths_pathways" type="data" format="csv" label="RP2paths pathways" /> - <param name="rp2paths_compounds" type="data" format="csv" label="RP2paths compounds" /> + <param name="rp2paths_compounds" type="data" format="tabular" label="RP2paths compounds" /> <param name="rp2_pathways" type="data" format="csv" label="RetroPath2.0 metabolic network" /> <param name="sink" type="data" format="csv" label="Sink from SBML" /> <section name="adv" title="Advanced Options" expanded="false"> @@ -43,14 +43,14 @@ <param name="rp2paths_compounds" value="3-rp2paths_compounds.tsv" /> <param name="rp2_pathways" value="1-rp2_metnet.csv" /> <param name="sink" value="2-sink.csv" /> - <output_collection name="pathways" type="list" count="9"/> + <output_collection name="pathways" type="list" count="10"/> </test> </tests> <help><![CDATA[ rpCompletion ============ -Completes mono-component reactions output by `RetroPath2.0 <https://www.sciencedirect.com/science/article/pii/S1096717617301337>`_ with the appropriate cofactors. Creates sub-paths when multiple reaction rules are associated with a single reaction. Input is a single pathways file produced by RP2Paths. It stands on rpCache which store pre-computed data. +Completes mono-component reactions output by `RetroPath2.0 <https://www.doi.org/10.1016/j.ymben.2017.12.002>`_ with the appropriate cofactors. Creates sub-paths when multiple reaction rules are associated with a single reaction. Input is a single pathways file produced by RP2Paths. It stands on rpCache which store pre-computed data. Input -----