Mercurial > repos > tduigou > rptools_rpthermo

changeset 2:b03d10ff2906 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit e13e495b1f56f5950636a5c68cf6a5ff6a713667
author tduigou
date Wed, 17 May 2023 07:50:19 +0000
parents 9a2fd7c58570
children d08a18c6167c
files rpthermo.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/rpthermo.xml	Tue May 16 12:00:45 2023 +0000
+++ b/rpthermo.xml	Wed May 17 07:50:19 2023 +0000
@@ -10,6 +10,7 @@
         <regex match="ERROR:root:ChemAxon" level="warning" />
     </stdio>
     <command detect_errors="exit_code"><![CDATA[
+        export XDG_CACHE_HOME="\${TMPDIR:-.}" ;
         python -m rptools.rpthermo
         '$input'
         '$pathway_with_thermo'
@@ -17,9 +18,9 @@
         --ionic_strength '$adv.ionic_strength'
         --pMg '$adv.pMg'
     ]]></command>
-    <environment_variables>
+    <!-- <environment_variables>
         <environment_variable name="XDG_CACHE_HOME">\$TMPDIR</environment_variable>
-    </environment_variables>
+    </environment_variables> -->
     <inputs>
         <param name="input" type="data" format="sbml" label="SBML Input File" help="Pathways in SBML format" />
         <section name="adv" title="Advanced Options" expanded="false">