Mercurial > repos > tduigou > rptools_rpviz

annotate test-data/rp_001_0006.xml @ 0:bf6f117ef632 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Wed, 16 Nov 2022 11:11:25 +0000
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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1 <?xml version="1.0" encoding="UTF-8"?>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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3 <model metaid="_9abfd4c46acaab90583da6a3a85bb5000b25ca6dcac80825140a206a3c167d09" id="RP_model_001_0006" name="001_0006" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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4 <listOfCompartments>
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5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
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6 <annotation>
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7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
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9 <bqbiol:is>
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10 <rdf:Bag>
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11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
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12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
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13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
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14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
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15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
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16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
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17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
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18 </rdf:Bag>
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19 </bqbiol:is>
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20 </rdf:Description>
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21 </rdf:RDF>
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22 </annotation>
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23 </compartment>
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24 </listOfCompartments>
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25 <listOfSpecies>
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26 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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27 <annotation>
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28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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29 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
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30 <bqbiol:is>
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31 <rdf:Bag/>
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32 </bqbiol:is>
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33 </rdf:Description>
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34 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
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35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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36 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
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37 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
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38 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
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39 <brsynth:fba_biomass_shadow_price>
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40 <brsynth:value value="-0.22852183570574747"/>
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41 </brsynth:fba_biomass_shadow_price>
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42 <brsynth:fba_fraction_shadow_price>
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43 <brsynth:value value="-1.0"/>
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44 </brsynth:fba_fraction_shadow_price>
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45 <brsynth:thermo_standard_dg_formation>
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46 <brsynth:value value="1245.5794452419402"/>
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47 <brsynth:units value="kilojoule / mole"/>
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48 </brsynth:thermo_standard_dg_formation>
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49 </brsynth:brsynth>
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50 </rdf:BRSynth>
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51 </rdf:RDF>
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52 </annotation>
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53 </species>
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54 <species metaid="_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc" id="MNXM132" name="MNXM132" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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55 <annotation>
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56 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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57 <rdf:Description rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
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58 <bqbiol:is>
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59 <rdf:Bag/>
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60 </bqbiol:is>
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61 </rdf:Description>
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62 <rdf:BRSynth rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
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63 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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64 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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65 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"/>
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66 <brsynth:inchikey value="CBIDRCWHNCKSTO-UHFFFAOYSA-N"/>
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67 <brsynth:fba_biomass_shadow_price>
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68 <brsynth:value value="None"/>
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69 </brsynth:fba_biomass_shadow_price>
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70 <brsynth:fba_fraction_shadow_price>
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71 <brsynth:value value="None"/>
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72 </brsynth:fba_fraction_shadow_price>
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73 <brsynth:thermo_standard_dg_formation>
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74 <brsynth:value value="-1833.2298341488033"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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75 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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76 </brsynth:thermo_standard_dg_formation>
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77 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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78 </rdf:BRSynth>
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79 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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80 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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81 </species>
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82 <species metaid="_04b973bebf0de87c9fe23384ce8fd1fef71a33cbb0b827ade48cd364bf14a23a" id="MNXM36" name="MNXM36" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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83 <annotation>
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84 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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85 <rdf:Description rdf:about="#_04b973bebf0de87c9fe23384ce8fd1fef71a33cbb0b827ade48cd364bf14a23a">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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86 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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87 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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88 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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89 </rdf:Description>
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90 <rdf:BRSynth rdf:about="#_04b973bebf0de87c9fe23384ce8fd1fef71a33cbb0b827ade48cd364bf14a23a">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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91 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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92 <brsynth:smiles/>
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93 <brsynth:inchi/>
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94 <brsynth:inchikey/>
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95 <brsynth:fba_biomass_shadow_price>
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96 <brsynth:value value="None"/>
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97 </brsynth:fba_biomass_shadow_price>
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98 <brsynth:fba_fraction_shadow_price>
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99 <brsynth:value value="None"/>
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100 </brsynth:fba_fraction_shadow_price>
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101 <brsynth:thermo_standard_dg_formation>
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102 <brsynth:value value="-2236.551670011945"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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103 <brsynth:units value="kilojoule / mole"/>
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104 </brsynth:thermo_standard_dg_formation>
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105 </brsynth:brsynth>
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106 </rdf:BRSynth>
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107 </rdf:RDF>
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108 </annotation>
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109 </species>
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110 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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111 <annotation>
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112 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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113 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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114 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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115 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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116 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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117 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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118 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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119 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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120 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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121 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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122 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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123 <brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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124 <brsynth:value value="-0.22852183570574747"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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125 </brsynth:fba_biomass_shadow_price>
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126 <brsynth:fba_fraction_shadow_price>
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127 <brsynth:value value="-1.0"/>
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128 </brsynth:fba_fraction_shadow_price>
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129 <brsynth:thermo_standard_dg_formation>
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130 <brsynth:value value="936.7141451846444"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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131 <brsynth:units value="kilojoule / mole"/>
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132 </brsynth:thermo_standard_dg_formation>
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133 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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134 </rdf:BRSynth>
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135 </rdf:RDF>
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136 </annotation>
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137 </species>
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138 <species metaid="_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4" id="MNXM8975" name="MNXM8975" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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139 <annotation>
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140 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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141 <rdf:Description rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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142 <bqbiol:is>
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143 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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144 </bqbiol:is>
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145 </rdf:Description>
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146 <rdf:BRSynth rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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147 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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148 <brsynth:smiles/>
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149 <brsynth:inchi/>
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150 <brsynth:inchikey/>
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151 <brsynth:fba_biomass_shadow_price>
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152 <brsynth:value value="None"/>
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153 </brsynth:fba_biomass_shadow_price>
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154 <brsynth:fba_fraction_shadow_price>
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155 <brsynth:value value="None"/>
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156 </brsynth:fba_fraction_shadow_price>
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157 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
158 <brsynth:value value="-2261.3806478863044"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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159 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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160 </brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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161 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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162 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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163 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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164 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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165 </species>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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166 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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167 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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168 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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169 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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170 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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171 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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172 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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173 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
174 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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175 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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176 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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177 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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178 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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179 <brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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180 <brsynth:value value="-0.2304026738597042"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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181 </brsynth:fba_biomass_shadow_price>
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182 <brsynth:fba_fraction_shadow_price>
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183 <brsynth:value value="-0.9919678714859437"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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184 </brsynth:fba_fraction_shadow_price>
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185 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
186 <brsynth:value value="-1495.8281099920857"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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187 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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188 </brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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189 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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190 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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191 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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192 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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193 </species>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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194 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="MNXM11" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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195 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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196 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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197 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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198 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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199 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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200 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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201 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
202 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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203 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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204 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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205 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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206 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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207 <brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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208 <brsynth:value value="None"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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209 </brsynth:fba_biomass_shadow_price>
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210 <brsynth:fba_fraction_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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211 <brsynth:value value="None"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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212 </brsynth:fba_fraction_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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213 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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214 <brsynth:value value="-1966.8036657706114"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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215 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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216 </brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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217 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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218 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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219 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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220 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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221 </species>
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222 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="MNXM83" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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223 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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224 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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225 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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226 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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227 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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228 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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229 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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230 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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231 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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232 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
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233 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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234 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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235 <brsynth:fba_biomass_shadow_price>
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236 <brsynth:value value="None"/>
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237 </brsynth:fba_biomass_shadow_price>
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238 <brsynth:fba_fraction_shadow_price>
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239 <brsynth:value value="None"/>
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240 </brsynth:fba_fraction_shadow_price>
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241 <brsynth:thermo_standard_dg_formation>
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242 <brsynth:value value="-1828.3274439664424"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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243 <brsynth:units value="kilojoule / mole"/>
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244 </brsynth:thermo_standard_dg_formation>
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245 </brsynth:brsynth>
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246 </rdf:BRSynth>
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247 </rdf:RDF>
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248 </annotation>
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249 </species>
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250 </listOfSpecies>
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251 <listOfParameters>
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252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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254 </listOfParameters>
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255 <listOfReactions>
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256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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257 <annotation>
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258 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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259 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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260 <bqbiol:is>
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261 <rdf:Bag>
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262 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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263 </rdf:Bag>
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264 </bqbiol:is>
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265 </rdf:Description>
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266 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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267 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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268 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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269 <brsynth:rp2_transfo_id value="TRS_0_2_739"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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270 <brsynth:rule_ids>
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271 <brsynth:RR-02-90bcfd187709eb1b-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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272 </brsynth:rule_ids>
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273 <brsynth:tmpl_rxn_ids>
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274 <brsynth:MNXR132232/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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275 </brsynth:tmpl_rxn_ids>
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276 <brsynth:rule_score value="0.5706379442030705"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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277 <brsynth:idx_in_path value="1"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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278 <brsynth:selenzy/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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279 <brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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280 <brsynth:value value="0.0"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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281 <brsynth:units value="gDW / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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282 </brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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283 <brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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284 <brsynth:value value="0.9388532834589367"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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285 <brsynth:units value="milimole / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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286 </brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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287 <brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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288 <brsynth:value value="-3015.9215101389987"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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289 <brsynth:error value="7.250256007547839"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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290 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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291 </brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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292 <brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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293 <brsynth:value value="-3050.151185208441"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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294 <brsynth:error value="7.250256007547839"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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295 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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296 </brsynth:thermo_dGm_prime>
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297 <brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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298 <brsynth:value value="-3015.9215101389987"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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299 <brsynth:error value="7.250256007547839"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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300 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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301 </brsynth:thermo_dG_prime>
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302 <brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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303 <brsynth:value value="-3734.681829188674"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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304 <brsynth:error value="7.250256007547839"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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305 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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306 </brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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307 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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308 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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309 </rdf:RDF>
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310 </annotation>
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311 <listOfReactants>
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312 <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
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313 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
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314 </listOfReactants>
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315 <listOfProducts>
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316 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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317 <speciesReference species="MNXM11" stoichiometry="3" constant="true"/>
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318 </listOfProducts>
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319 </reaction>
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320 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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321 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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322 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
323 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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324 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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325 <rdf:Bag>
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326 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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327 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/>
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328 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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329 </rdf:Bag>
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330 </bqbiol:is>
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331 </rdf:Description>
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diff changeset
332 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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333 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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334 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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335 <brsynth:rp2_transfo_id value="TRS_0_1_9"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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336 <brsynth:rule_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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337 <brsynth:RR-02-bedda4e2f5001e0c-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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338 </brsynth:rule_ids>
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tduigou
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339 <brsynth:tmpl_rxn_ids>
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tduigou
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diff changeset
340 <brsynth:MNXR111250/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
341 <brsynth:MNXR111499/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
342 <brsynth:MNXR113543/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
343 <brsynth:MNXR118024/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
344 <brsynth:MNXR139549/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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345 </brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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346 <brsynth:rule_score value="0.5518755963407151"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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347 <brsynth:idx_in_path value="2"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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348 <brsynth:selenzy/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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349 <brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
350 <brsynth:value value="0.0"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
351 <brsynth:units value="gDW / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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352 </brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
353 <brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
354 <brsynth:value value="0.9388532834589367"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
355 <brsynth:units value="milimole / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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356 </brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
357 <brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
358 <brsynth:value value="-119.13360567395966"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
359 <brsynth:error value="11.000567449695138"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
360 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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361 </brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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362 <brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
363 <brsynth:value value="-153.36328074340173"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
364 <brsynth:error value="11.000567449695138"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
365 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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366 </brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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367 <brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
368 <brsynth:value value="-119.13360567395966"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
369 <brsynth:error value="11.000567449695138"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
370 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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371 </brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
372 <brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
373 <brsynth:value value="-1501.0650763644926"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
374 <brsynth:error value="11.000567449695138"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
375 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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376 </brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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377 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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378 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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379 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
380 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
381 <listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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382 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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383 </listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
384 <listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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385 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
386 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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387 </listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
388 </reaction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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389 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
390 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
391 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
392 <rdf:Description rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
393 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
394 <rdf:Bag>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
395 <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.31"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
396 </rdf:Bag>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
397 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
398 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
399 <rdf:BRSynth rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
400 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
401 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
402 <brsynth:rp2_transfo_id value="TRS_0_0_1"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
403 <brsynth:rule_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
404 <brsynth:RR-02-ae41ec5771136ea5-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
405 </brsynth:rule_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
406 <brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
407 <brsynth:MNXR117536/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
408 </brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
409 <brsynth:rule_score value="0.7358363677022237"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
410 <brsynth:idx_in_path value="3"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
411 <brsynth:selenzy/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
412 <brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
413 <brsynth:value value="0.0"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
414 <brsynth:units value="gDW / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
415 </brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
416 <brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
417 <brsynth:value value="0.9388532834589367"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
418 <brsynth:units value="milimole / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
419 </brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
420 <brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
421 <brsynth:value value="225.28622017594057"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
422 <brsynth:error value="5.600796500160482"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
423 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
424 </brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
425 <brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
426 <brsynth:value value="225.28622017594057"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
427 <brsynth:error value="5.600796500160482"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
428 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
429 </brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
430 <brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
431 <brsynth:value value="225.28622017594057"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
432 <brsynth:error value="5.600796500160482"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
433 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
434 </brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
435 <brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
436 <brsynth:value value="408.1812115547325"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
437 <brsynth:error value="5.600796500160482"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
438 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
439 </brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
440 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
441 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
442 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
443 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
444 <listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
445 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
446 <speciesReference species="MNXM8975" stoichiometry="4" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
447 </listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
448 <listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
449 <speciesReference species="MNXM36" stoichiometry="4" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
450 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
451 </listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
452 </reaction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
453 </listOfReactions>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
454 <groups:listOfGroups>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
455 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
456 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
457 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
458 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
459 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
460 <brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
461 <brsynth:value value="0.8769972144269625"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
462 <brsynth:units value="gDW / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
463 </brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
464 <brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
465 <brsynth:value value="0.9388532834589367"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
466 <brsynth:units value="milimole / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
467 </brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
468 <brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
469 <brsynth:value value="-2909.7688956370166"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
470 <brsynth:error value="20.95110294460444"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
471 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
472 </brsynth:thermo_dG0_prime>
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tduigou
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diff changeset
473 <brsynth:thermo_dGm_prime>
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tduigou
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474 <brsynth:value value="-2978.2282457759006"/>
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tduigou
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475 <brsynth:error value="20.95110294460444"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
476 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
477 </brsynth:thermo_dGm_prime>
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tduigou
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diff changeset
478 <brsynth:thermo_dG_prime>
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tduigou
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479 <brsynth:value value="-2909.7688956370166"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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480 <brsynth:error value="20.95110294460444"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
481 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
482 </brsynth:thermo_dG_prime>
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tduigou
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diff changeset
483 <brsynth:thermo_dG>
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tduigou
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484 <brsynth:value value="-4827.565693998434"/>
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tduigou
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diff changeset
485 <brsynth:error value="20.95110294460444"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
486 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
487 </brsynth:thermo_dG>
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tduigou
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diff changeset
488 <brsynth:global_score value="0.9850397169589996"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
489 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
490 </rdf:BRSynth>
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tduigou
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diff changeset
491 </rdf:RDF>
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tduigou
parents:
diff changeset
492 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
493 <groups:listOfMembers>
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tduigou
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diff changeset
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tduigou
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diff changeset
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
497 </groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
498 </groups:group>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
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tduigou
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diff changeset
500 <annotation>
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tduigou
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diff changeset
501 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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tduigou
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503 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
504 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
505 </rdf:RDF>
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tduigou
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diff changeset
506 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
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tduigou
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diff changeset
508 <groups:member groups:idRef="CMPD_0000000003"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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509 <groups:member groups:idRef="CMPD_0000000001"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
510 </groups:listOfMembers>
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tduigou
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diff changeset
511 </groups:group>
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tduigou
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diff changeset
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tduigou
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diff changeset
513 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
514 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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tduigou
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diff changeset
516 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
517 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
518 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
519 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
520 <groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
521 <groups:member groups:idRef="TARGET_0000000001"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
522 <groups:member groups:idRef="MNXM132"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
523 <groups:member groups:idRef="CMPD_0000000001"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
524 <groups:member groups:idRef="CMPD_0000000003"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
525 <groups:member groups:idRef="MNXM83"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
526 </groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
527 </groups:group>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
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tduigou
parents:
diff changeset
529 <annotation>
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tduigou
parents:
diff changeset
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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tduigou
parents:
diff changeset
532 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
533 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
534 </rdf:RDF>
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tduigou
parents:
diff changeset
535 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
536 <groups:listOfMembers>
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tduigou
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diff changeset
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
539 <groups:member groups:idRef="MNXM11"/>
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tduigou
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diff changeset
540 </groups:listOfMembers>
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tduigou
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diff changeset
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tduigou
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tduigou
parents:
diff changeset
543 <annotation>
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tduigou
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diff changeset
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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546 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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547 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
548 </rdf:RDF>
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tduigou
parents:
diff changeset
549 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
551 <groups:member groups:idRef="MNXM83"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
552 <groups:member groups:idRef="MNXM132"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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553 <groups:member groups:idRef="MNXM11"/>
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554 </groups:listOfMembers>
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555 </groups:group>
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556 <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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557 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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558 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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559 <rdf:BRSynth rdf:about="#a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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560 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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561 </rdf:BRSynth>
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562 </rdf:RDF>
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563 </annotation>
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564 <groups:listOfMembers>
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565 <groups:member groups:idRef="MNXM36"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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566 <groups:member groups:idRef="MNXM8975"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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567 </groups:listOfMembers>
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568 </groups:group>
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569 <groups:group metaid="fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8" groups:id="rp_thermo_substituted_species" groups:kind="collection">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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570 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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571 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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572 <rdf:BRSynth rdf:about="#fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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573 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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574 </rdf:BRSynth>
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575 </rdf:RDF>
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576 </annotation>
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577 <groups:listOfMembers>
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578 <groups:member groups:idRef="TARGET_0000000001"/>
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579 <groups:member groups:idRef="MNXM36"/>
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580 <groups:member groups:idRef="MNXM8975"/>
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581 </groups:listOfMembers>
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582 </groups:group>
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583 </groups:listOfGroups>
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584 </model>
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585 </sbml>