changeset 12:54e19bceff70 draft

Uploaded
author testtool
date Thu, 16 Mar 2017 07:21:37 -0400
parents 5e0ac671c613
children 77c0aee75ac6
files annotatePeak/.RData annotatePeak/.Rapp.history annotatePeak/.Rhistory annotatePeak/._.DS_Store annotatePeak/annotatePeak.R annotatePeak/annotatePeak.xml annotatePeak/test-data/._.DS_Store annotatePeak/test-data/DMR.bed annotatePeak/test-data/annoPeakTable.csv annotatePeak/tool_dependencies.xml annotate_peak/._.DS_Store annotate_peak/annotatePeak.R annotate_peak/annotatePeak.xml annotate_peak/test-data/DMR.bed annotate_peak/test-data/annoPeakTable.csv annotate_peak/tool_dependencies.xml
diffstat 15 files changed, 20094 insertions(+), 20325 deletions(-) [+]
line wrap: on
line diff
Binary file annotatePeak/.RData has changed
--- a/annotatePeak/.Rhistory	Thu Mar 16 07:21:10 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,231 +0,0 @@
-TAB <- read.csv("input.csv")
-mysamples <- lapply(TAB$ID,function(x)getGEO(x))
-input <- function(TAB) { if(is(TAB, "csv")){
-TAB <- read.csv("input.csv")}
-else{
-print("error in data file")
-}}
-input()
-TAB <- read.csv("input.csv")}
-TAB <- read.csv("input.csv")
-test_func <- function(
-clusterSize=2,
-cutoff=0.2,
-platform_id='HM450',
-genome_id='hg19')
-{
-args = commandArgs(trailingOnly=TRUE)
-methyl_file = args[1]
-ChiPseq_file = args[2]
-output_file = args[3]
-options(warn=-1)
-TAB=read.csv(methyl_file)
-ChiPseq=import(ChiPseq_file)
-if(is.null(TAB)){
-stop("Must specify input files")
-}else{
-mysamples <- lapply(TAB$ID,function(x) getGEO(x))
-}
-wrappedFunction <- function(test_func)
-s0 <- lapply(mysamples,Table)
-id_ref<-lapply(s0,function(x)x$ID_REF)
-if(length(unique(id_ref)) != 1) {
-stop("Error different ID_REF for samples")
-} else if (is.null((unlist(unique(id_ref))))) {
-stop("NO GSM data avaliable")
-} else {
-values<-do.call("cbind",lapply(s0,function(x)x$VALUE))
-colnames(values)=TAB$ID
-rownames(values)=id_ref[[1]]
-cg <-  rownames(values)
-probe <- c(cg)
-hm450.hg19 <- getPlatform(platform=platform_id, genome=genome_id)
-probe.info <- hm450.hg19[probe]
-f <- data.table(probe=names(probe.info),CHR=as.data.frame(probe.info@seqnames)$value,
-BP=as.numeric(probe.info@elementMetadata$probeStart))
-designMatrix <- model.matrix(~ TAB$Phenotype)
-DMR <- bumphunter(values, design = designMatrix,
-pos=f$BP,cutoff=cutoff,chr=f$CHR)
-MAT <- DMR$table[which(DMR$table$L>=clusterSize),]
-METH <- GRanges(seqnames=MAT$chr,
-ranges=IRanges
-(start=MAT$start,
-end=MAT$end),
-value_pos=MAT$value)
-peaks<-findOverlapsOfPeaks(probe.info,ChiPseq,maxgap=5000)
-p <- peaks$peaklist$`probe.info///ChiPseq`
-peakAnno <- annotatePeak(p, file=peakAnno)
-output_file <- annotatePeak(p, file=output_file)
-}}
-test_func <- function(
-clusterSize=2,
-cutoff=0.2,
-platform_id='HM450',
-genome_id='hg19')
-{
-args = commandArgs(trailingOnly=TRUE)
-methyl_file = args[1]
-ChiPseq_file = args[2]
-output_file = args[3]
-options(warn=-1)
-TAB=read.csv(methyl_file)
-ChiPseq=import(ChiPseq_file)
-if(is.null(TAB)){
-stop("Must specify input files")
-}else{
-mysamples <- lapply(TAB$ID,function(x) getGEO(x))
-}
-wrappedFunction <- function(test_func)
-s0 <- lapply(mysamples,Table)
-id_ref<-lapply(s0,function(x)x$ID_REF)
-if(length(unique(id_ref)) != 1) {
-stop("Error different ID_REF for samples")
-} else if (is.null((unlist(unique(id_ref))))) {
-stop("NO GSM data avaliable")
-} else {
-values<-do.call("cbind",lapply(s0,function(x)x$VALUE))
-colnames(values)=TAB$ID
-rownames(values)=id_ref[[1]]
-cg <-  rownames(values)
-probe <- c(cg)
-hm450.hg19 <- getPlatform(platform=platform_id, genome=genome_id)
-probe.info <- hm450.hg19[probe]
-f <- data.table(probe=names(probe.info),CHR=as.data.frame(probe.info@seqnames)$value,
-BP=as.numeric(probe.info@elementMetadata$probeStart))
-designMatrix <- model.matrix(~ TAB$Phenotype)
-DMR <- bumphunter(values, design = designMatrix,
-pos=f$BP,cutoff=cutoff,chr=f$CHR)
-MAT <- DMR$table[which(DMR$table$L>=clusterSize),]
-METH <- GRanges(seqnames=MAT$chr,
-ranges=IRanges
-(start=MAT$start,
-end=MAT$end),
-value_pos=MAT$value)
-peaks<-findOverlapsOfPeaks(probe.info,ChiPseq,maxgap=5000)
-p <- peaks$peaklist$`probe.info///ChiPseq`
-peakAnno <- annotatePeak(p, file=peakAnno)
-output_file <- annotatePeak(p, file=output_file)
-}}
-)
-a<-c(3.2,3.7,3.6,3.9,3.7,3.5,3.8,4,3.5)
-a<-c(3.2,3.7,3.6,3.9,3.7,3.5,3.8,4,3.5)
-b<-c(2.9,2.7,2,6,2.7,2.5,2.5,3.2,3.1,3.3,2.8)
-a-b
-file<-read.csv("~/Documents/SS2.csv")
-head(file)
-e
-file
-t.test(file$WBT,file$WBA)
-t.test(file$WBT,file$WBA,paired=TRUE)
-mysamples <- lapply(TAB$ID,function(x) TablegetGEO(x))
-require("GEOquery",quietly = TRUE)
-require("BiocGenerics",quietly = TRUE)
-args <- commandArgs(trailingOnly = TRUE)
-csv_file = args[1]
-#csv_file <- ("test-data/input.csv")
-TAB=read.csv(csv_file)
-if(is.null(TAB)){
-stop("Must specify input files")
-}else{
-mysamples <- lapply(TAB$ID,function(x) TablegetGEO(x))
-}
-csv_file <- ("test-data/input.csv")
-TAB=read.csv(csv_file)
-figure = args[3]
-upsetplot(anno, vennpie=TRUE)
-dev.copy(png,'fig.png')
-png(upsetplot(anno, vennpie=TRUE))
-upsetplot(anno, vennpie=TRUE)
-require("ChIPseeker",quietly = TRUE)
-require("ChIPpeakAnno",quietly = TRUE)
-upsetplot(anno, vennpie=TRUE)
-figure<-('test-data/figure.png')
-anno <- annotatePeak(peaks,level="gene", annoDb="org.Hs.eg.db" )
-input=read.table(input,header = FALSE, sep="\t",stringsAsFactors=FALSE, quote="")
-input<-("test-data/bump.bed")
-input=read.table(input,header = FALSE, sep="\t",stringsAsFactors=FALSE, quote="")
-peaks <- GRanges(seqnames=input[,1],ranges=IRanges
-(start=input[,2],end= input[,3]))
-anno <- annotatePeak(peaks,level="gene", annoDb="org.Hs.eg.db" )
-peakAnno_genes <- as.data.frame(anno)
-upsetplot(anno, vennpie=TRUE)
-figure<-('test-data/figure.png')
-png(figure)
-dev.off()
-png(figure)
-upsetplot(anno, vennpie=TRUE)
-org.Hs.eg.db
-??org.Hs.eg.db
-require("ChIPseeker", quietly = TRUE)
-require("ChIPpeakAnno", quietly = TRUE)
-DMRInfo = read.table(
-DMR,
-header = FALSE,
-sep = "\t",
-stringsAsFactors = FALSE,
-quote = ""
-)
-DMRPeaks <- GRanges(seqnames = DMRInfo[, 1],
-ranges = IRanges
-(start = DMRInfo[, 2], end = DMRInfo[, 3]))
-annotatePeak <-
-as.data.frame(annotatePeak(DMRPeaks, level = "gene", annoDb = "org.Hs.eg.db"))
-??org.Hs.eg.db
-DMR <- ("test-data/DMR.bed")
-DMRInfo = read.table(
-DMR,
-header = FALSE,
-sep = "\t",
-stringsAsFactors = FALSE,
-quote = ""
-)
-DMRPeaks <- GRanges(seqnames = DMRInfo[, 1],
-ranges = IRanges
-(start = DMRInfo[, 2], end = DMRInfo[, 3]))
-??GRanges
-require("GenomicRanges", quietly = TRUE)
-DMRPeaks <- GRanges(seqnames = DMRInfo[, 1],
-ranges = IRanges
-(start = DMRInfo[, 2], end = DMRInfo[, 3]))
-annotatePeak <-
-as.data.frame(annotatePeak(DMRPeaks, level = "gene", annoDb = "org.Hs.eg.db"))
-require("ChIPseeker", quietly = TRUE)
-require("ChIPpeakAnno", quietly = TRUE)
-annotatePeak <-
-as.data.frame(annotatePeak(DMRPeaks, level = "gene", annoDb = "org.Hs.eg.db"))
-annotatePeak <-
-as.data.frame(annotatePeak(DMRPeaks, level = "gene", annoDb = "org.Hs.eg.db"))
-write.csv(as.data.frame(annotatePeak), annoPeakTable, row.names = FALSE)
-DMR <- ("test-data/DMR.bed")
-DMRInfo = read.table(
-DMR,
-header = FALSE,
-sep = "\t",
-stringsAsFactors = FALSE,
-quote = ""
-)
-DMRPeaks <- GRanges(seqnames = DMRInfo[, 1],
-ranges = IRanges
-DMRPeaks <- GRanges(seqnames = DMRInfo[, 1],
-ranges = IRanges
-(start = DMRInfo[, 2], end = DMRInfo[, 3]))
-??GRanges
-options(warn = -1)
-args <- commandArgs(trailingOnly = TRUE)
-DMR = args[1]
-annoPeakTable = args[2]
-DMR <- ("test-data/DMR.bed")
-DMRInfo = read.table(
-DMR,
-header = FALSE,
-sep = "\t",
-stringsAsFactors = FALSE,
-quote = ""
-)
-DMRPeaks <- GRanges(seqnames = DMRInfo[, 1],
-ranges = IRanges
-(start = DMRInfo[, 2], end = DMRInfo[, 3]))
-??GRanges
-annotatePeak <-
-as.data.frame(annotatePeak(DMRPeaks, level = "gene", annoDb = "org.Hs.eg.db"))
-annotatePeak <- as.data.frame(annotatePeak(DMRPeaks, level = "gene", annoDb = "org.Hs.eg.db"))
Binary file annotatePeak/._.DS_Store has changed
--- a/annotatePeak/annotatePeak.R	Thu Mar 16 07:21:10 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,26 +0,0 @@
-require("ChIPseeker", quietly = TRUE)
-require("ChIPpeakAnno", quietly = TRUE)
-require("org.Hs.eg.db", quietly = TRUE)
-require("GenomicRanges", quietly = TRUE)
-options(warn = -1)
-
-args <- commandArgs(trailingOnly = TRUE)
-DMR = args[1]
-annoPeakTable = args[2]
-
-
-DMRInfo = read.table(
-  DMR,
-  header = FALSE,
-  sep = "\t",
-  stringsAsFactors = FALSE,
-  quote = ""
-)
-
-DMRPeaks <- GRanges(seqnames = DMRInfo[, 1],
-                    ranges = IRanges
-                    (start = DMRInfo[, 2], end = DMRInfo[, 3]))
-
-annotatePeak <- as.data.frame(annotatePeak(DMRPeaks, level = "gene", annoDb = "org.Hs.eg.db"))
-
-write.csv(annotatePeak, annoPeakTable, row.names = FALSE)
--- a/annotatePeak/annotatePeak.xml	Thu Mar 16 07:21:10 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
-<tool id="AP" name="annotatePeak" version="1.16.2">
-  <requirements>
-         <requirement type="package" version="3.2.1">R</requirement>
-     </requirements>
-<stdio>
-   <exit_code range="1:" />
-</stdio>
-  <command> Rscript $__tool_directory__/annotatePeak.R "$DMR" "$annoPeakTable"</command>
-  <inputs>
-    <param optional="false" format="bed" name="DMR" type="data" value="" help="Bumphunter peaks." label="[required] file">
-      <validator type="empty_field" message="This field is required."/>
-    </param>
-  </inputs>
-  <outputs>
-    <data format="csv" name="annoPeakTable" label="peakAnno.csv"/>
-  </outputs>
-  <tests>
-    <test>
-      <param name="test">
-      <element name="test-data">
-          <collection type="data">
-          <element name="DMR" value="test-data/DMR.bed"/>
-          </collection>
-        </element>
-        </param>
-        <output format="csv" name="annoPeakTable" label="test-data/annoPeakTable.csv"/>
-        </test>
-    </tests>
-  <help>
-**Description**
-</help>
-<citations>
-DMR
-</citations>
-</tool>
Binary file annotatePeak/test-data/._.DS_Store has changed
--- a/annotatePeak/test-data/DMR.bed	Thu Mar 16 07:21:10 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9881 +0,0 @@
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-chr20	6104267	6104274
-chr4	77871616	77871846
-chr2	236293419	236293433
-chr5	132073658	132073868
-chr4	3567485	3567670
-chr15	99434633	99434688
-chr19	49946108	49946433
-chr19	40971869	40971904
-chr16	2771183	2771425
-chr10	75911181	75911381
-chr11	65314161	65314454
-chr4	99458299	99458354
-chr12	51795291	51795298
-chr16	28915196	28915234
-chr10	44321630	44321795
-chr7	157369847	157369942
-chr8	79578035	79578116
-chr3	150421675	150421817
-chr20	43922401	43922664
-chr12	49524048	49524181
-chr2	208795771	208795859
-chr10	99052507	99052618
-chr6	4772842	4773278
-chr13	40746549	40746600
-chr3	48956740	48956913
-chr14	53019119	53019294
-chr10	11386631	11386866
-chr8	134224814	134224842
-chr16	89165406	89165605
-chr10	101190703	101190764
-chr7	26416122	26416184
-chr17	41924351	41924357
-chr16	87027322	87027441
-chr7	36192369	36192770
-chr17	75315503	75315527
-chr2	153574197	153574281
-chr8	102380912	102381002
-chr1	50489606	50489714
-chr15	22954743	22954769
-chr12	110718311	110718550
-chr1	812200	812539
-chr10	85899209	85899224
-chr10	105253104	105253294
-chr6	170373755	170373903
-chr18	77139037	77139248
-chr1	28994987	28995092
-chr18	76754902	76754913
-chr12	6730309	6730599
-chr11	18719942	18720026
-chr8	142852815	142852890
-chr4	3478064	3478161
-chr22	25201891	25201906
-chr6	170481752	170481885
-chr3	126911715	126911844
-chr3	97540617	97540975
-chr6	33141824	33141958
-chr6	170449587	170449810
-chr2	171705073	171705415
-chr12	111856416	111856652
-chr12	123200485	123200953
-chr5	148786254	148786329
-chr11	66056587	66056676
-chr6	137814680	137814912
-chr9	96328401	96328529
-chr12	56652115	56652260
-chr19	36705612	36705659
-chr12	116920091	116920256
-chr1	18957020	18957023
-chr9	139258476	139258938
-chr11	107436445	107436452
-chr1	16174732	16175060
-chr1	11710412	11710610
-chr7	1950147	1950232
-chr2	86422857	86422958
-chr13	70681230	70681317
-chr5	168189625	168189635
-chr6	110678956	110679107
-chr15	90294520	90294607
-chr6	33381798	33381867
-chr7	158319029	158319098
-chr15	74537868	74537915
-chr16	60438	60700
-chr2	164204704	164204829
-chr17	26926627	26926738
-chr15	91361926	91362421
-chr16	14622500	14622926
-chr10	124899755	124899894
-chr6	18264737	18264786
-chr5	170833402	170833637
-chr15	37170506	37170768
-chr19	7293341	7293776
-chr20	56804110	56804279
-chr12	71552457	71552569
-chr15	40545097	40545127
-chr7	23144751	23144792
-chr7	97911938	97912101
-chr6	31475887	31475895
-chr10	103578534	103578579
-chr1	63790044	63790202
-chr2	80549797	80549973
-chr3	112051808	112051846
-chr21	33247885	33247984
-chr2	113398727	113399144
-chr6	139695804	139695808
-chr6	73935125	73935200
-chr1	1228942	1229105
-chr5	156773546	156773616
-chr3	18480249	18480341
-chr2	242566905	242566940
-chr2	240239755	240239767
-chr17	48858588	48858603
-chr16	89342351	89342629
-chr13	28544814	28545214
-chr1	26233404	26233435
-chr13	114062198	114062507
-chr1	33235571	33235717
-chr3	48594424	48594454
-chrX	42637449	42637506
-chr5	131347720	131347725
-chr15	93257477	93257579
-chr1	9380708	9380800
-chr12	110888158	110888232
-chr13	53776211	53776396
-chr9	139840384	139840630
-chr3	96495326	96495603
-chr4	7287567	7287737
-chr11	65819726	65819742
-chr20	25371652	25371671
-chr19	5567758	5568093
-chr6	33272178	33272186
-chr7	156801539	156801818
-chr17	48698713	48698751
-chr12	131258228	131258361
-chr9	5831674	5831951
-chrX	154842736	154842793
-chr15	43513504	43513563
-chr8	30890469	30890553
-chr8	145019491	145019563
-chr11	65196125	65196174
-chr21	46019376	46019570
-chr22	41777755	41777779
-chr1	43147939	43148010
-chr2	178257542	178257632
-chr11	1446386	1446802
-chr6	32820153	32820214
-chr19	15343347	15343377
-chr9	4679736	4679986
-chr10	90343387	90343641
-chr8	54852115	54852232
-chr9	95947098	95947348
-chr16	88761048	88761284
-chr20	20257813	20258001
-chr13	30948114	30948122
-chr7	95026538	95026672
-chr7	44530455	44530521
-chr5	2752553	2752834
-chr16	30798770	30798776
-chr19	46713398	46713416
-chr4	1352452	1352787
-chr8	61566034	61566391
-chr6	170065843	170065938
-chr16	21294899	21295207
-chr20	23028842	23028977
-chr6	133562475	133562479
-chr2	62732892	62733114
-chr11	7951168	7951173
-chr17	79792936	79792949
-chr13	96705664	96705738
-chr5	132386262	132386298
-chr12	7126208	7126344
-chr3	119421553	119421604
-chr8	72754421	72754905
-chr6	30134908	30135065
-chr22	20130575	20130698
-chr1	53542934	53543090
-chr8	1765679	1765772
-chr5	180615482	180615543
-chr7	158857749	158858057
-chr16	89557908	89557923
-chr10	11783974	11784058
-chr19	10444117	10444479
-chr11	102669042	102669291
-chr4	1604438	1604576
-chr10	50747266	50747328
-chr6	33265322	33265386
-chr3	49142215	49142226
-chr8	143193033	143193131
-chr16	23193800	23193885
-chr17	40332910	40332961
-chr3	54157647	54157677
-chr6	30881579	30881595
-chr6	27100067	27100370
-chr16	31383055	31383088
-chr5	175223598	175223982
-chr11	102745886	102746236
-chr17	56296115	56296444
-chr16	4511869	4511939
-chr4	103790056	103790299
-chr15	31284413	31284569
-chr11	104034282	104034571
-chr20	18569003	18569196
-chr19	22019044	22019059
-chr8	61429582	61429779
-chr11	66335975	66336077
-chr10	133758671	133758839
-chr6	31856959	31857034
-chr3	51428372	51428392
-chr14	104647027	104647046
-chr20	60737957	60738265
-chr2	119606698	119607049
-chr11	2813073	2813298
-chr11	2020129	2020231
-chr14	104175847	104176333
-chr11	1785547	1785552
-chr1	161009415	161009644
-chr7	39170539	39170715
-chr17	45855505	45855691
-chr20	21686205	21686264
-chr5	141693817	141694185
-chr17	840927	841205
-chr2	3750517	3750952
-chrX	118708041	118708065
-chr17	43238138	43238230
-chr6	169226282	169226337
-chr3	160283421	160283489
-chr7	1959941	1960073
-chr1	231762664	231762689
-chr10	7860354	7860463
-chr7	157367159	157367462
-chr17	76498943	76498964
-chr14	102027124	102027514
-chr17	26941944	26942145
-chr8	96036568	96036755
-chr4	15964902	15965016
-chrX	48329927	48329937
-chr11	10472101	10472108
-chr4	39460330	39460342
-chr6	32549313	32549496
-chr7	104654852	104654870
-chr6	159240766	159240774
-chr19	1079986	1080466
-chr1	39339553	39339683
-chr4	74486409	74486510
-chr6	29999567	29999708
-chr1	84543108	84543369
-chr1	8877774	8877813
-chr12	39298591	39298776
-chr6	42946146	42946178
-chr14	77279079	77279247
-chr1	2565265	2565729
-chr17	72368116	72368179
-chr5	138612986	138613030
-chr6	26502058	26502192
-chr7	2598460	2598473
-chr19	8649796	8649942
-chr3	127006239	127006414
-chr5	132072786	132072925
-chr4	870161	870443
-chr11	1365592	1365668
-chr16	1575153	1575219
-chr1	76189753	76189897
-chr2	130691926	130691932
-chr11	1413842	1413990
-chr7	1881390	1881839
--- a/annotatePeak/test-data/annoPeakTable.csv	Thu Mar 16 07:21:10 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9882 +0,0 @@
-"seqnames","start","end","width","strand","annotation","geneChr","geneStart","geneEnd","geneLength","geneStrand","geneId","distanceToTSS","ENSEMBL","SYMBOL","GENENAME"
-"chrX",106959609,106960186,578,"*","5' UTR",23,106956452,107019202,62751,2,"1831",59016,"ENSG00000157514","TSC22D3","TSC22 domain family member 3"
-"chr1",54203844,54204501,658,"*","Distal Intergenic",1,53971906,54199877,227972,2,"148979",-3967,"ENSG00000174332","GLIS1","GLIS family zinc finger 1"
-"chr5",112073385,112073454,70,"*","Intron (uc011cvt.2/324, intron 1 of 13)",5,112043202,112181936,138735,1,"324",30183,"ENSG00000134982","APC","adenomatous polyposis coli"
-"chr18",56338460,56338659,200,"*","Promoter (<=1kb)",18,56338618,56417370,78753,1,"10892",0,"ENSG00000172175","MALT1","MALT1 paracaspase"
-"chr6",29943460,29944045,586,"*","Intron (uc021ytw.1/3136, intron 3 of 4)",6,28471073,28483570,12498,2,"257202",-1459890,"ENSG00000198704","GPX6","glutathione peroxidase 6"
-"chr11",64405452,64405993,542,"*","Intron (uc001oap.3/9379, intron 6 of 6)",11,64358282,64369825,11544,1,"116085",47170,"ENSG00000197891","SLC22A12","solute carrier family 22 member 12"
-"chr4",1363998,1364344,347,"*","Intron (uc003gde.4/57654, intron 8 of 13)",4,1385340,1389782,4443,1,"285464",-20996,"ENSG00000179979","CRIPAK","cysteine rich PAK1 inhibitor"
-"chr16",78079753,78080193,441,"*","Distal Intergenic",16,78056443,78066001,9559,1,"10143",23310,"ENSG00000166509","CLEC3A","C-type lectin domain family 3 member A"
-"chr3",38070886,38071301,416,"*","Promoter (<=1kb)",3,38048987,38071154,22168,2,"5333",0,"ENSG00000187091","PLCD1","phospholipase C delta 1"
-"chr2",175351922,175352168,247,"*","Promoter (<=1kb)",2,175296300,175351816,55517,2,"151556",-106,"ENSG00000163328","GPR155","G protein-coupled receptor 155"
-"chr4",1806633,1807332,700,"*","Exon (uc003gdq.3/2261, exon 10 of 17)",4,1795039,1810599,15561,1,"2261",11594,"ENSG00000068078","FGFR3","fibroblast growth factor receptor 3"
-"chr6",28793329,28793608,280,"*","Distal Intergenic",6,28471073,28483570,12498,2,"257202",-309759,"ENSG00000198704","GPX6","glutathione peroxidase 6"
-"chr4",1205447,1206004,558,"*","Promoter (2-3kb)",4,1189571,1202750,13180,2,"100130872",-2697,NA,"LOC100130872","uncharacterized LOC100130872"
-"chr3",113775302,113775388,87,"*","Promoter (<=1kb)",3,113682984,113775460,92477,2,"57577",72,"ENSG00000163617","CCDC191","coiled-coil domain containing 191"
-"chr16",3085934,3086940,1007,"*","Promoter (<=1kb)",16,3077868,3085542,7675,2,"146439",-392,"ENSG00000162069","CCDC64B","coiled-coil domain containing 64B"
-"chr2",27485967,27486122,156,"*","Intron (uc010ylh.2/7781, intron 7 of 8)",2,27477440,27498188,20749,2,"7781",12066,"ENSG00000115194","SLC30A3","solute carrier family 30 member 3"
-"chr1",2918058,2918526,469,"*","Distal Intergenic",1,2938046,2939467,1422,1,"140625",-19520,"ENSG00000169717","ACTRT2","actin related protein T2"
-"chr17",422325,422568,244,"*","3' UTR",17,289771,295731,5961,2,"359845",-126594,"ENSG00000183688","FAM101B","family with sequence similarity 101 member B"
-"chr5",141031071,141031094,24,"*","Promoter (<=1kb)",5,141018869,141030986,12118,2,"89848",-85,"ENSG00000197948","FCHSD1","FCH and double SH3 domains 1"
-"chr6",17987573,17987659,87,"*","Promoter (<=1kb)",6,17759414,17987854,228441,2,"63971",195,"ENSG00000137177","KIF13A","kinesin family member 13A"
-"chr17",2952307,2952767,461,"*","Distal Intergenic",17,2965963,2966901,939,2,"8386",14134,"ENSG00000262628","OR1D5","olfactory receptor family 1 subfamily D member 5"
-"chr19",16653151,16653581,431,"*","Promoter (<=1kb)",19,16628700,16653263,24564,2,"10523",0,"ENSG00000085872","CHERP","calcium homeostasis endoplasmic reticulum protein"
-"chr3",193921489,193922037,549,"*","Distal Intergenic",3,193853931,193856401,2471,1,"3280",67558,"ENSG00000114315","HES1","hes family bHLH transcription factor 1"
-"chr2",70418309,70418827,519,"*","Promoter (<=1kb)",2,70377017,70418151,41135,2,"54980",-158,"ENSG00000115998","C2orf42","chromosome 2 open reading frame 42"
-"chr16",1095625,1096754,1130,"*","Distal Intergenic",16,1122756,1131454,8699,1,"6755",-26002,"ENSG00000162009","SSTR5","somatostatin receptor 5"
-"chr11",2161355,2161411,57,"*","Promoter (<=1kb)",11,2161758,2169896,8139,1,"51214",-347,"ENSG00000099869","IGF2-AS","IGF2 antisense RNA"
-"chr12",51664503,51664607,105,"*","Promoter (<=1kb)",12,51639133,51664202,25070,2,"57228",-301,"ENSG00000170545","SMAGP","small cell adhesion glycoprotein"
-"chr16",1705991,1706153,163,"*","Exon (uc010uvh.2/57585, exon 9 of 20)",16,1728278,1752073,23796,1,"90861",-22125,"ENSG00000206053","HN1L","hematological and neurological expressed 1-like"
-"chr14",23067033,23067188,156,"*","Promoter (<=1kb)",14,23067147,23081265,14119,1,"63874",0,"ENSG00000100439","ABHD4","abhydrolase domain containing 4"
-"chr3",173113110,173113519,410,"*","Promoter (2-3kb)",3,173116244,174001116,884873,1,"22871",-2725,"ENSG00000169760","NLGN1","neuroligin 1"
-"chr7",50444039,50444317,279,"*","Exon (uc003tow.4/10320, exon 4 of 8)",7,50511832,50518088,6257,2,"63979",73771,"ENSG00000132436","FIGNL1","fidgetin like 1"
-"chr3",100053070,100053140,71,"*","Promoter (<=1kb)",3,100053562,100074478,20917,1,"56954",-422,"ENSG00000114021","NIT2","nitrilase family member 2"
-"chr17",6918792,6918952,161,"*","Promoter (2-3kb)",17,6920934,6921341,408,2,"574456",2389,"ENSG00000273895","MIR497","microRNA 497"
-"chr2",175350573,175351649,1077,"*","Promoter (<=1kb)",2,175296300,175351816,55517,2,"151556",167,"ENSG00000163328","GPR155","G protein-coupled receptor 155"
-"chr6",33216768,33217142,375,"*","Distal Intergenic",6,33540323,33548070,7748,2,"578",330928,"ENSG00000030110","BAK1","BCL2 antagonist/killer 1"
-"chr16",85646762,85646832,71,"*","Promoter (1-2kb)",16,85645029,85709812,64784,1,"23199",1733,"ENSG00000131149","GSE1","Gse1 coiled-coil protein"
-"chr16",11439254,11439785,532,"*","5' UTR",16,11374693,11375192,500,2,"5619",-64062,"ENSG00000175646","PRM1","protamine 1"
-"chr2",201981786,201981873,88,"*","Promoter (<=1kb)",2,201980877,202037411,56535,1,"8837",909,"ENSG00000003402","CFLAR","CASP8 and FADD like apoptosis regulator"
-"chr10",128993810,128994432,623,"*","Promoter (<=1kb)",10,128933690,128994422,60733,2,"642938",0,"ENSG00000188916","FAM196A","family with sequence similarity 196 member A"
-"chr7",116593215,116593288,74,"*","Promoter (<=1kb)",7,116593381,116870075,276695,1,"7982",-93,"ENSG00000004866","ST7","suppression of tumorigenicity 7"
-"chr16",29873565,29874506,942,"*","Promoter (<=1kb)",16,29869678,29874578,4901,2,"10423",72,"ENSG00000103502","CDIPT","CDP-diacylglycerol--inositol 3-phosphatidyltransferase"
-"chr22",40742327,40742374,48,"*","Promoter (<=1kb)",22,40742504,40762575,20072,1,"158",-130,"ENSG00000239900","ADSL","adenylosuccinate lyase"
-"chr21",46031707,46032038,332,"*","Promoter (<=1kb)",21,46031996,46032871,876,1,"386681",0,"ENSG00000187766","KRTAP10-8","keratin associated protein 10-8"
-"chr6",31940192,31940302,111,"*","Exon (uc003nyt.3/8859, exon 2 of 8)",6,32485154,32557613,72460,2,"3127",617311,"ENSG00000198502","HLA-DRB5","major histocompatibility complex, class II, DR beta 5"
-"chr2",128784344,128784923,580,"*","Promoter (<=1kb)",2,128698791,128785633,86843,2,"79595",710,"ENSG00000136715","SAP130","Sin3A associated protein 130kDa"
-"chr19",45927001,45927018,18,"*","Intron (uc002pbs.2/2067, intron 9 of 9)",19,45882892,45909607,26716,2,"10848",-17394,"ENSG00000104881","PPP1R13L","protein phosphatase 1 regulatory subunit 13 like"
-"chr16",24550834,24552079,1246,"*","Promoter (1-2kb)",16,24549014,24584183,35170,1,"5930",1820,"ENSG00000122257","RBBP6","retinoblastoma binding protein 6"
-"chr6",26284890,26285184,295,"*","Promoter (<=1kb)",6,26285354,26285727,374,2,"8365",543,"ENSG00000158406","HIST1H4H","histone cluster 1, H4h"
-"chr22",47158324,47158521,198,"*","Promoter (<=1kb)",22,47158518,47571342,412825,1,"25771",0,"ENSG00000054611","TBC1D22A","TBC1 domain family member 22A"
-"chr3",63850035,63850278,244,"*","Promoter (<=1kb)",3,63850233,63989136,138904,1,"6314",0,"ENSG00000163635","ATXN7","ataxin 7"
-"chr16",672235,672882,648,"*","Intron (uc021szt.1/57799, intron 4 of 6)",16,681012,684116,3105,1,"117166",-8130,"ENSG00000127578","WFIKKN1","WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1"
-"chr14",57274763,57275234,472,"*","Promoter (1-2kb)",14,57267425,57277194,9770,2,"5015",1960,"ENSG00000165588","OTX2","orthodenticle homeobox 2"
-"chr16",3766844,3767679,836,"*","Promoter (<=1kb)",16,3708038,3767598,59561,2,"10131",0,"ENSG00000126602","TRAP1","TNF receptor-associated protein 1"
-"chr3",44036098,44036453,356,"*","Distal Intergenic",3,44155704,44155802,99,1,"406929",-119251,"ENSG00000207954","MIR138-1","microRNA 138-1"
-"chr15",32907294,32907402,109,"*","Promoter (<=1kb)",15,32907345,32931868,24524,1,"9824",0,"ENSG00000198826","ARHGAP11A","Rho GTPase activating protein 11A"
-"chr17",48637584,48637666,83,"*","Promoter (<=1kb)",17,48638429,48704832,66404,1,"8913",-763,"ENSG00000006283","CACNA1G","calcium voltage-gated channel subunit alpha1 G"
-"chr5",137800779,137801033,255,"*","Promoter (<=1kb)",5,137801181,137805004,3824,1,"1958",-148,"ENSG00000120738","EGR1","early growth response 1"
-"chr22",20004369,20004611,243,"*","Promoter (<=1kb)",22,20004554,20053447,48894,1,"128989",0,"ENSG00000183597","TANGO2","transport and golgi organization 2 homolog"
-"chr19",35531102,35531591,490,"*","Promoter (<=1kb)",19,35531410,35557477,26068,1,"3249",0,"ENSG00000105707","HPN","hepsin"
-"chr18",32397976,32398246,271,"*","5' UTR",18,32556892,32723432,166541,1,"10982",-158646,"ENSG00000166974","MAPRE2","microtubule associated protein RP/EB family member 2"
-"chr22",30162987,30162991,5,"*","Promoter (<=1kb)",22,30126945,30163000,36056,2,"55954",9,"ENSG00000100319","ZMAT5","zinc finger matrin-type 5"
-"chr17",78032296,78032492,197,"*","Exon (uc010wub.2/55036, exon 8 of 9)",17,78010431,78074412,63982,1,"55036",21865,"ENSG00000141519","CCDC40","coiled-coil domain containing 40"
-"chr10",131927297,131927449,153,"*","Distal Intergenic",10,131934639,131982785,48147,1,"10539",-7190,"ENSG00000108010","GLRX3","glutaredoxin 3"
-"chr19",1947674,1947912,239,"*","Intron (uc002lul.4/1455, intron 1 of 11)",19,1941161,1981336,40176,1,"1455",6513,"ENSG00000133275","CSNK1G2","casein kinase 1 gamma 2"
-"chr1",36106988,36107155,168,"*","Promoter (<=1kb)",1,36035413,36107445,72033,2,"5690",290,"ENSG00000126067","PSMB2","proteasome subunit beta 2"
-"chr9",101568927,101569648,722,"*","Promoter (<=1kb)",9,101569981,101612363,42383,1,"79695",-333,"ENSG00000119514","GALNT12","polypeptide N-acetylgalactosaminyltransferase 12"
-"chr18",48346660,48346795,136,"*","Intron (uc002lex.4/83876, intron 7 of 7)",18,48321490,48351754,30265,2,"83876",4959,"ENSG00000134042","MRO","maestro"
-"chr1",211652228,211652741,514,"*","3' UTR",1,211649864,211666259,16396,2,"343035",13518,"ENSG00000198570","RD3","retinal degeneration 3"
-"chr4",1294432,1294566,135,"*","Intron (uc010ibs.1/10296, intron 1 of 4)",4,1283672,1333925,50254,1,"10296",10760,"ENSG00000090316","MAEA","macrophage erythroblast attacher"
-"chr1",12079449,12079505,57,"*","Promoter (<=1kb)",1,12079299,12092106,12808,1,"60672",150,"ENSG00000116691","MIIP","migration and invasion inhibitory protein"
-"chr14",103740037,103740476,440,"*","Distal Intergenic",14,103800339,103811361,11023,1,"1983",-59863,"ENSG00000100664","EIF5","eukaryotic translation initiation factor 5"
-"chr12",108237572,108237937,366,"*","Distal Intergenic",12,108296927,108297548,622,2,"728739",59611,NA,"LOC728739","programmed cell death 2 pseudogene"
-"chr13",113097259,113097633,375,"*","Distal Intergenic",13,113030651,113089009,58359,1,"122258",66608,"ENSG00000153498","SPACA7","sperm acrosome associated 7"
-"chr18",63417557,63417735,179,"*","Promoter (<=1kb)",18,63417488,63548175,130688,1,"1005",69,"ENSG00000081138","CDH7","cadherin 7"
-"chr3",51976003,51976171,169,"*","Promoter (<=1kb)",3,51967442,51975957,8516,2,"9136",-46,"ENSG00000114767","RRP9","ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)"
-"chr12",123237034,123237126,93,"*","Promoter (<=1kb)",12,123237371,123255953,18583,1,"8562",-245,"ENSG00000139726","DENR","density-regulated protein"
-"chr9",88555654,88555863,210,"*","Promoter (<=1kb)",9,88556057,88637217,81161,1,"60560",-194,"ENSG00000135040","NAA35","N(alpha)-acetyltransferase 35, NatC auxiliary subunit"
-"chr3",53289290,53289728,439,"*","Promoter (<=1kb)",3,53258723,53290130,31408,2,"7086",402,"ENSG00000163931","TKT","transketolase"
-"chr16",31214346,31214378,33,"*","Promoter (<=1kb)",16,31212807,31214097,1291,2,"29108",-249,"ENSG00000103490","PYCARD","PYD and CARD domain containing"
-"chr12",8185029,8185344,316,"*","Promoter (<=1kb)",12,8185359,8208118,22760,1,"55810",-15,"ENSG00000065970","FOXJ2","forkhead box J2"
-"chr10",38146893,38147096,204,"*","Promoter (<=1kb)",10,38065454,38147012,81559,2,"57209",0,"ENSG00000198105","ZNF248","zinc finger protein 248"
-"chr11",62341426,62341521,96,"*","Promoter (<=1kb)",11,62327073,62342401,15329,2,"1937",880,"ENSG00000254772","EEF1G","eukaryotic translation elongation factor 1 gamma"
-"chr14",65239309,65239653,345,"*","Exon (uc010aqi.3/6710, exon 7 of 18)",14,65171193,65211060,39868,1,"26030",68116,"ENSG00000126822","PLEKHG3","pleckstrin homology and RhoGEF domain containing G3"
-"chr20",42219469,42219655,187,"*","Promoter (<=1kb)",20,42219579,42275862,56284,1,"51098",0,"ENSG00000101052","IFT52","intraflagellar transport 52"
-"chr12",10364612,10365082,471,"*","Promoter (<=1kb)",12,10365489,10375724,10236,1,"23710",-407,"ENSG00000139112","GABARAPL1","GABA(A) receptor-associated protein like 1"
-"chr3",48487981,48488082,102,"*","Promoter (<=1kb)",3,48488114,48509044,20931,1,"84126",-32,"ENSG00000164053","ATRIP","ATR interacting protein"
-"chr7",45614242,45614720,479,"*","Promoter (<=1kb)",7,45613739,45762714,148976,1,"107",503,"ENSG00000164742","ADCY1","adenylate cyclase 1 (brain)"
-"chr2",208632784,208633283,500,"*","Promoter (<=1kb)",2,208627310,208634143,6834,2,"7855",860,"ENSG00000163251","FZD5","frizzled class receptor 5"
-"chr9",75136064,75136701,638,"*","Promoter (<=1kb)",9,75136717,75451267,314551,1,"117531",-16,"ENSG00000165091","TMC1","transmembrane channel like 1"
-"chr12",12966076,12966271,196,"*","5' UTR",12,12917583,12917677,95,1,"693198",48493,"ENSG00000207983","MIR613","microRNA 613"
-"chr1",16563734,16563906,173,"*","Promoter (<=1kb)",1,16558182,16563659,5478,2,"79363",-75,"ENSG00000132881","RSG1","REM2 and RAB like small GTPase 1"
-"chr16",2255332,2255883,552,"*","Promoter (<=1kb)",16,2255178,2259418,4241,1,"64223",154,"ENSG00000167965","MLST8","MTOR associated protein, LST8 homolog"
-"chr9",77642922,77643323,402,"*","Promoter (<=1kb)",9,77597873,77643310,45438,2,"138199",0,"ENSG00000156017","CARNMT1","carnosine N-methyltransferase 1"
-"chr14",56047764,56047916,153,"*","Promoter (<=1kb)",14,56046925,56151302,104378,1,"3895",839,"ENSG00000126777","KTN1","kinectin 1"
-"chr19",10138244,10138615,372,"*","Distal Intergenic",19,10152032,10184813,32782,1,"388503",-13417,"ENSG00000167798","C3P1","complement component 3 precursor pseudogene"
-"chr17",73901016,73901339,324,"*","5' UTR",17,73894724,73905899,11176,2,"64978",4560,"ENSG00000204316","MRPL38","mitochondrial ribosomal protein L38"
-"chr16",14397688,14397766,79,"*","Promoter (<=1kb)",16,14397824,14397906,83,1,"574455",-58,"ENSG00000207639","MIR193B","microRNA 193b"
-"chr16",30457360,30457524,165,"*","Promoter (<=1kb)",16,30454952,30457224,2273,2,"22928",-136,"ENSG00000179918","SEPHS2","selenophosphate synthetase 2"
-"chr1",155243076,155243300,225,"*","5' UTR",1,155247218,155259639,12422,1,"57657",-3918,"ENSG00000143630","HCN3","hyperpolarization activated cyclic nucleotide gated potassium channel 3"
-"chr16",32936895,32937009,115,"*","Intron (uc021thc.2/uc021thc.2, intron 4 of 8)",16,32888797,32896463,7667,2,"386757",-40432,"ENSG00000214617","SLC6A10P","solute carrier family 6 member 10, pseudogene"
-"chr7",18067530,18067535,6,"*","Promoter (<=1kb)",7,18066400,18067486,1087,2,"221823",-44,"ENSG00000229937","PRPS1L1","phosphoribosyl pyrophosphate synthetase 1-like 1"
-"chr11",1304252,1304348,97,"*","Intron (uc001ltd.3/54472, intron 1 of 5)",11,1295598,1330892,35295,2,"54472",26544,"ENSG00000078902","TOLLIP","toll interacting protein"
-"chr16",56677510,56677585,76,"*","Promoter (<=1kb)",16,56677599,56678853,1255,1,"326343",-14,NA,"MT1DP","metallothionein 1D, pseudogene"
-"chr20",2821434,2821485,52,"*","Promoter (<=1kb)",20,2821373,2847378,26006,1,"64601",61,"ENSG00000215305","VPS16","VPS16, CORVET/HOPS core subunit"
-"chr1",153914312,153914453,142,"*","Exon (uc001fdd.1/9909, exon 6 of 28)",1,153901977,153919154,17178,2,"9909",4701,"ENSG00000198837","DENND4B","DENN domain containing 4B"
-"chr16",2569925,2570212,288,"*","Promoter (<=1kb)",16,2570363,2580955,10593,1,"51005",-151,"ENSG00000162066","AMDHD2","amidohydrolase domain containing 2"
-"chr15",68870979,68871357,379,"*","Promoter (<=1kb)",15,68871308,69020144,148837,1,"10391",0,"ENSG00000103647","CORO2B","coronin 2B"
-"chr17",7517617,7517649,33,"*","Promoter (<=1kb)",17,7517382,7536700,19319,1,"6462",235,"ENSG00000129214","SHBG","sex hormone-binding globulin"
-"chr16",28608846,28609531,686,"*","Promoter (<=1kb)",16,28603264,28608391,5128,2,"6799",-455,"ENSG00000197165","SULT1A2","sulfotransferase family 1A member 2"
-"chr7",2563136,2563622,487,"*","Intron (uc021zyw.1/3955, intron 2 of 8)",7,2566708,2566786,79,1,"100616116",-3086,"ENSG00000264357","MIR4648","microRNA 4648"
-"chr1",75139583,75139958,376,"*","Promoter (<=1kb)",1,75033795,75139422,105628,2,"127254",-161,"ENSG00000178965","ERICH3","glutamate rich 3"
-"chr7",44104935,44105118,184,"*","Promoter (<=1kb)",7,44102326,44105186,2861,2,"5224",68,"ENSG00000164708","PGAM2","phosphoglycerate mutase 2"
-"chr16",4852372,4852777,406,"*","Promoter (<=1kb)",16,4846963,4852951,5989,2,"79641",174,"ENSG00000067836","ROGDI","rogdi homolog"
-"chr6",101328458,101329304,847,"*","Promoter (<=1kb)",6,100956608,101329224,372617,2,"10973",0,"ENSG00000112249","ASCC3","activating signal cointegrator 1 complex subunit 3"
-"chr20",35504198,35504371,174,"*","Promoter (<=1kb)",20,35504570,35522632,18063,1,"140711",-199,"ENSG00000101342","TLDC2","TBC/LysM-associated domain containing 2"
-"chr6",33656083,33656500,418,"*","Exon (uc021ywr.1/3710, exon 48 of 58)",6,33664538,33679528,14991,2,"84300",23028,"ENSG00000137288","UQCC2","ubiquinol-cytochrome c reductase complex assembly factor 2"
-"chr12",120739972,120740007,36,"*","Promoter (<=1kb)",12,120740124,120751045,10922,1,"23409",-117,"ENSG00000089163","SIRT4","sirtuin 4"
-"chr1",247579560,247580517,958,"*","Promoter (<=1kb)",1,247579458,247612406,32949,1,"114548",102,"ENSG00000162711","NLRP3","NLR family, pyrin domain containing 3"
-"chr8",37824481,37824496,16,"*","Promoter (<=1kb)",8,37820514,37824184,3671,2,"155",-297,"ENSG00000188778","ADRB3","adrenoceptor beta 3"
-"chr12",108079012,108079503,492,"*","Promoter (<=1kb)",12,108079590,108106257,26668,1,"11137",-87,"ENSG00000136045","PWP1","PWP1 homolog, endonuclein"
-"chr19",10735958,10736001,44,"*","Intron (uc002mpe.4/57153, intron 1 of 21)",19,10713121,10755235,42115,1,"57153",22837,"ENSG00000129353","SLC44A2","solute carrier family 44 member 2"
-"chr7",154706045,154706916,872,"*","Distal Intergenic",7,154720227,154741196,20970,1,"100132707",-13311,"ENSG00000214106","PAXIP1-AS2","PAXIP1 antisense RNA 2"
-"chr16",8962538,8962970,433,"*","Promoter (<=1kb)",16,8946799,8962869,16071,2,"23589",0,"ENSG00000153048","CARHSP1","calcium regulated heat stable protein 1"
-"chr10",45914477,45914640,164,"*","Intron (uc001jce.4/240, intron 4 of 13)",10,45869624,45941567,71944,1,"240",44853,"ENSG00000012779","ALOX5","arachidonate 5-lipoxygenase"
-"chr16",12211050,12211322,273,"*","Intron (uc002dby.5/92017, intron 11 of 20)",16,12070602,12668146,597545,1,"92017",140448,"ENSG00000048471","SNX29","sorting nexin 29"
-"chr16",31366118,31366418,301,"*","Promoter (<=1kb)",16,31366509,31394318,27810,1,"3687",-91,"ENSG00000140678","ITGAX","integrin subunit alpha X"
-"chr14",58893467,58893740,274,"*","Promoter (<=1kb)",14,58894103,59015549,121447,1,"9786",-363,"ENSG00000100578","KIAA0586","KIAA0586"
-"chr18",23806180,23806263,84,"*","Promoter (<=1kb)",18,23806409,23971650,165242,1,"6875",-146,"ENSG00000141384","TAF4B","TATA-box binding protein associated factor 4b"
-"chr7",82541,82911,371,"*","Distal Intergenic",7,192969,300740,107772,1,"56975",-110058,"ENSG00000177706","FAM20C","family with sequence similarity 20 member C"
-"chr15",77287290,77287608,319,"*","Promoter (<=1kb)",15,77287021,77329671,42651,1,"9051",269,"ENSG00000140368","PSTPIP1","proline-serine-threonine phosphatase interacting protein 1"
-"chr15",69706335,69706469,135,"*","Promoter (<=1kb)",15,69706627,69740764,34138,1,"9493",-158,"ENSG00000137807","KIF23","kinesin family member 23"
-"chr3",195622522,195622598,77,"*","Intron (uc003fvu.1/10188, intron 14 of 14)",3,195590236,195638816,48581,2,"10188",16218,"ENSG00000061938","TNK2","tyrosine kinase, non-receptor, 2"
-"chr12",24102533,24103021,489,"*","5' UTR",12,24365355,24365429,75,1,"100126320",-262334,"ENSG00000216192","MIR920","microRNA 920"
-"chr10",31607330,31607651,322,"*","Promoter (<=1kb)",10,31607424,31818742,211319,1,"6935",0,"ENSG00000148516","ZEB1","zinc finger E-box binding homeobox 1"
-"chr3",53164962,53165031,70,"*","Promoter (<=1kb)",3,53122501,53164470,41970,2,"91869",-492,"ENSG00000163933","RFT1","RFT1 homolog"
-"chr16",19566218,19566823,606,"*","Promoter (<=1kb)",16,19566737,19712485,145749,1,"57020",0,"ENSG00000103544","C16orf62","chromosome 16 open reading frame 62"
-"chr19",18451444,18451525,82,"*","Promoter (<=1kb)",19,18451408,18480763,29356,1,"54858",36,"ENSG00000130517","PGPEP1","pyroglutamyl-peptidase I"
-"chr7",100493811,100494332,522,"*","Promoter (<=1kb)",7,100487615,100494539,6925,2,"43",207,"ENSG00000087085","ACHE","acetylcholinesterase (Yt blood group)"
-"chr16",3550032,3550792,761,"*","Promoter (<=1kb)",16,3550945,3589051,38107,1,"23059",-153,"ENSG00000103351","CLUAP1","clusterin associated protein 1"
-"chr16",20359396,20359923,528,"*","Exon (uc002dgz.3/7369, exon 3 of 11)",16,20344373,20364037,19665,2,"7369",4114,"ENSG00000169344","UMOD","uromodulin"
-"chr2",27994492,27994636,145,"*","Promoter (<=1kb)",2,27994584,28002608,8025,1,"9553",0,"ENSG00000243147","MRPL33","mitochondrial ribosomal protein L33"
-"chr16",8715546,8715882,337,"*","Promoter (<=1kb)",16,8715527,8740079,24553,1,"79091",19,"ENSG00000067365","METTL22","methyltransferase like 22"
-"chr16",30379343,30380183,841,"*","Promoter (1-2kb)",16,30368422,30381522,13101,2,"26000",1339,"ENSG00000169221","TBC1D10B","TBC1 domain family member 10B"
-"chr16",29296186,29296693,508,"*","Intron (uc010vct.2/uc010vct.2, intron 6 of 7)",16,29302828,29418349,115522,1,"440352",-6135,NA,"SNX29P2","sorting nexin 29 pseudogene 2"
-"chr15",45879564,45879610,47,"*","Promoter (<=1kb)",15,45879417,45901909,22493,1,"26258",147,"ENSG00000104164","BLOC1S6","biogenesis of lysosomal organelles complex 1 subunit 6"
-"chr11",70289501,70289510,10,"*","Distal Intergenic",11,70244612,70282690,38079,1,"2017",44889,"ENSG00000085733","CTTN","cortactin"
-"chr20",56935373,56935483,111,"*","3' UTR",20,56964175,57026156,61982,1,"9217",-28692,"ENSG00000124164","VAPB","VAMP (vesicle-associated membrane protein)-associated protein B and C"
-"chr10",48355005,48355070,66,"*","Promoter (<=1kb)",10,48355089,48373866,18778,1,"118738",-19,"ENSG00000265763","ZNF488","zinc finger protein 488"
-"chr14",63568147,63568558,412,"*","Promoter (<=1kb)",14,63173945,63568584,394640,2,"27133",26,"ENSG00000140015","KCNH5","potassium voltage-gated channel subfamily H member 5"
-"chr1",224518178,224518192,15,"*","Promoter (<=1kb)",1,224415036,224517891,102856,2,"4931",-287,"ENSG00000143748","NVL","nuclear VCP-like"
-"chr10",99447118,99447212,95,"*","Promoter (<=1kb)",10,99437181,99447015,9835,2,"60370",-103,"ENSG00000119986","AVPI1","arginine vasopressin induced 1"
-"chr2",130763379,130763641,263,"*","Distal Intergenic",2,130724165,130738045,13881,2,"100131320",-25334,"ENSG00000225449","RAB6C-AS1","RAB6C antisense RNA 1"
-"chr1",27901757,27902687,931,"*","Intron (uc009vsy.3/27245, intron 6 of 6)",1,27860756,27930361,69606,2,"27245",27674,"ENSG00000126705","AHDC1","AT-hook DNA binding motif containing 1"
-"chr16",19124971,19125137,167,"*","Promoter (<=1kb)",16,19125254,19132952,7699,1,"162073",-117,"ENSG00000205730","ITPRIPL2","inositol 1,4,5-trisphosphate receptor interacting protein-like 2"
-"chr17",74236897,74237210,314,"*","Promoter (<=1kb)",17,74138534,74236390,97857,2,"114804",-507,"ENSG00000141576","RNF157","ring finger protein 157"
-"chr1",228782809,228783335,527,"*","Promoter (2-3kb)",1,228780394,228788159,7766,1,"574029",2415,NA,"DUSP5P1","dual specificity phosphatase 5 pseudogene 1"
-"chr15",85144175,85144257,83,"*","Promoter (<=1kb)",15,85144249,85166947,22699,1,"54993",0,"ENSG00000176371","ZSCAN2","zinc finger and SCAN domain containing 2"
-"chr5",122181105,122181680,576,"*","Promoter (<=1kb)",5,122181160,122344902,163743,1,"28966",0,"ENSG00000064652","SNX24","sorting nexin 24"
-"chr2",143886278,143886375,98,"*","Promoter (<=1kb)",2,143886899,144525921,639023,1,"55843",-524,"ENSG00000075884","ARHGAP15","Rho GTPase activating protein 15"
-"chr20",31349704,31349891,188,"*","Promoter (<=1kb)",20,31350191,31397162,46972,1,"1789",-300,"ENSG00000088305","DNMT3B","DNA (cytosine-5-)-methyltransferase 3 beta"
-"chr19",7964567,7964703,137,"*","Exon (uc002mir.3/80131, exon 3 of 3)",19,7968765,7979363,10599,1,"5609",-4062,"ENSG00000076984","MAP2K7","mitogen-activated protein kinase kinase 7"
-"chr16",33853176,33853496,321,"*","Distal Intergenic",16,33961052,33962503,1452,2,"649159",109007,"ENSG00000256642","LINC00273","long intergenic non-protein coding RNA 273"
-"chr4",2845528,2845623,96,"*","Promoter (<=1kb)",4,2845584,2931802,86219,1,"118",0,"ENSG00000087274","ADD1","adducin 1"
-"chr16",30661660,30661867,208,"*","Promoter (<=1kb)",16,30662241,30667734,5494,1,"78994",-374,"ENSG00000156858","PRR14","proline rich 14"
-"chr10",93567106,93567261,156,"*","Intron (uc001khp.3/80351, intron 1 of 26)",10,93558151,93625232,67082,1,"80351",8955,"ENSG00000107854","TNKS2","tankyrase 2"
-"chr5",1076844,1077231,388,"*","Exon (uc003jbu.3/10723, exon 13 of 24)",5,1063011,1063089,79,2,"100616479",-13755,"ENSG00000263834","MIR4635","microRNA 4635"
-"chr11",644011,644218,208,"*","Downstream (<1kb)",11,637305,640705,3401,1,"1815",6706,"ENSG00000069696","DRD4","dopamine receptor D4"
-"chr6",31937228,31937307,80,"*","Exon (uc003nyn.1/6499, exon 28 of 28)",6,32485154,32557613,72460,2,"3127",620306,"ENSG00000198502","HLA-DRB5","major histocompatibility complex, class II, DR beta 5"
-"chr16",89752831,89753123,293,"*","Promoter (<=1kb)",16,89753076,89762772,9697,1,"8558",0,"ENSG00000185324","CDK10","cyclin-dependent kinase 10"
-"chr2",71017211,71017557,347,"*","Promoter (<=1kb)",2,71004442,71017775,13334,2,"344018",218,"ENSG00000183733","FIGLA","folliculogenesis specific bHLH transcription factor"
-"chr19",41767621,41768027,407,"*","Promoter (<=1kb)",19,41768391,41813811,45421,1,"11100",-364,"ENSG00000105323","HNRNPUL1","heterogeneous nuclear ribonucleoprotein U-like 1"
-"chr8",145019582,145019681,100,"*","Promoter (<=1kb)",8,145019359,145019447,89,2,"724031",-135,"ENSG00000207574","MIR661","microRNA 661"
-"chr16",49593978,49594703,726,"*","Intron (uc010vgn.3/23090, intron 3 of 5)",16,49407808,49433319,25512,1,"123970",186170,"ENSG00000166152","C16orf78","chromosome 16 open reading frame 78"
-"chr15",92459255,92459857,603,"*","Exon (uc002bqx.2/28232, exon 2 of 10)",15,92396938,92715665,318728,1,"28232",62317,"ENSG00000176463","SLCO3A1","solute carrier organic anion transporter family member 3A1"
-"chr2",174890420,174890570,151,"*","Distal Intergenic",2,174771187,174830430,59244,2,"6670",-59990,"ENSG00000172845","SP3","Sp3 transcription factor"
-"chr6",25652357,25652531,175,"*","Promoter (<=1kb)",6,25652429,25702008,49580,1,"10590",0,"ENSG00000079689","SCGN","secretagogin, EF-hand calcium binding protein"
-"chr18",72201590,72201615,26,"*","Promoter (<=1kb)",18,72201692,72252261,50570,1,"84735",-77,"ENSG00000150656","CNDP1","carnosine dipeptidase 1 (metallopeptidase M20 family)"
-"chr5",66124492,66124515,24,"*","Intron (uc003jur.4/375449, intron 3 of 5)",5,65892176,66465423,573248,1,"375449",232316,"ENSG00000069020","MAST4","microtubule associated serine/threonine kinase family member 4"
-"chr16",19534852,19535044,193,"*","Promoter (<=1kb)",16,19535179,19564728,29550,1,"9738",-135,"ENSG00000103540","CCP110","centriolar coiled-coil protein 110kDa"
-"chr16",89268689,89268799,111,"*","Promoter (2-3kb)",16,89262169,89266529,4361,2,"146429",-2160,"ENSG00000259803","SLC22A31","solute carrier family 22 member 31"
-"chr6",168972162,168972469,308,"*","Intron (uc003qwr.2/64094, intron 7 of 12)",6,168841831,169068674,226844,1,"64094",130331,"ENSG00000112562","SMOC2","SPARC related modular calcium binding 2"
-"chr1",151810856,151811572,717,"*","Promoter (<=1kb)",1,151810945,151816641,5697,1,"100132111",0,NA,"LOC100132111","uncharacterized LOC100132111"
-"chr1",94344811,94344881,71,"*","Promoter (<=1kb)",1,94335014,94344762,9749,2,"30836",-49,"ENSG00000067334","DNTTIP2","deoxynucleotidyltransferase, terminal, interacting protein 2"
-"chr5",132082753,132083105,353,"*","Promoter (<=1kb)",5,132083137,132089856,6720,1,"645121",-32,"ENSG00000205089","CCNI2","cyclin I family member 2"
-"chr10",93557965,93558141,177,"*","Promoter (<=1kb)",10,93558151,93625232,67082,1,"80351",-10,"ENSG00000107854","TNKS2","tankyrase 2"
-"chr1",220960463,220960506,44,"*","Promoter (<=1kb)",1,220960039,220987741,27703,1,"64757",424,"ENSG00000186205","MARC1","mitochondrial amidoxime reducing component 1"
-"chr10",51827480,51827594,115,"*","Promoter (<=1kb)",10,51780942,51827563,46622,2,"326332",0,NA,NA,NA
-"chr7",157369960,157370206,247,"*","Promoter (2-3kb)",7,157367028,157367114,87,2,"406945",-2846,"ENSG00000207960","MIR153-2","microRNA 153-2"
-"chr6",114178172,114178324,153,"*","Promoter (<=1kb)",6,114178527,114184652,6126,1,"4082",-203,"ENSG00000277443","MARCKS","myristoylated alanine rich protein kinase C substrate"
-"chr14",69282992,69283484,493,"*","Distal Intergenic",14,69254372,69262960,8589,2,"677",-20032,"ENSG00000185650","ZFP36L1","ZFP36 ring finger protein-like 1"
-"chr7",92861558,92861612,55,"*","Promoter (<=1kb)",7,92861653,92990435,128783,1,"55610",-41,"ENSG00000004766","VPS50","VPS50, EARP/GARPII complex subunit"
-"chr19",18303845,18303865,21,"*","Promoter (<=1kb)",19,18304040,18307550,3511,1,"84769",-175,"ENSG00000254858","MPV17L2","MPV17 mitochondrial membrane protein-like 2"
-"chr17",73975697,73976041,345,"*","Promoter (<=1kb)",17,73937589,73975515,37927,2,"51",-182,"ENSG00000161533","ACOX1","acyl-CoA oxidase 1, palmitoyl"
-"chr21",43809471,43809567,97,"*","Intron (uc002zba.2/64699, intron 10 of 10)",21,43791996,43816955,24960,2,"64699",7388,"ENSG00000160183","TMPRSS3","transmembrane protease, serine 3"
-"chr10",27529785,27530202,418,"*","Promoter (<=1kb)",10,27484143,27531068,46926,2,"91452",866,"ENSG00000107897","ACBD5","acyl-CoA binding domain containing 5"
-"chr17",73201717,73201932,216,"*","Promoter (<=1kb)",17,73201597,73231854,30258,1,"79902",120,"ENSG00000125450","NUP85","nucleoporin 85kDa"
-"chr3",124605199,124605640,442,"*","Promoter (<=1kb)",3,124481795,124606144,124350,2,"3693",504,"ENSG00000082781","ITGB5","integrin subunit beta 5"
-"chr14",31028192,31028335,144,"*","Promoter (<=1kb)",14,31028329,31089046,60718,1,"55632",0,"ENSG00000092140","G2E3","G2/M-phase specific E3 ubiquitin protein ligase"
-"chr6",26104245,26104560,316,"*","Promoter (<=1kb)",6,26104176,26104565,390,1,"8364",69,"ENSG00000197061","HIST1H4C","histone cluster 1, H4c"
-"chr15",73735608,73735694,87,"*","Promoter (<=1kb)",15,73735499,73852353,116855,1,"283677",109,"ENSG00000183324","REC114","REC114 meiotic recombination protein"
-"chr8",1954777,1955069,293,"*","3' UTR",8,1922044,1955109,33066,1,"9920",32733,"ENSG00000176595","KBTBD11","kelch repeat and BTB domain containing 11"
-"chr11",10315561,10315706,146,"*","Promoter (<=1kb)",11,9800214,10315754,515541,2,"81846",48,"ENSG00000133812","SBF2","SET binding factor 2"
-"chr16",3062320,3062349,30,"*","Promoter (<=1kb)",16,3062457,3064506,2050,1,"9080",-108,"ENSG00000213937","CLDN9","claudin 9"
-"chr12",56862322,56862729,408,"*","Promoter (<=1kb)",12,56862301,56864767,2467,1,"283377",21,"ENSG00000176422","SPRYD4","SPRY domain containing 4"
-"chr4",10041728,10042401,674,"*","Promoter (<=1kb)",4,9827848,10041872,214025,2,"56606",0,"ENSG00000109667","SLC2A9","solute carrier family 2 member 9"
-"chr17",31487,31552,66,"*","Promoter (<=1kb)",17,6011,31420,25410,2,"8447",-67,"ENSG00000272636","DOC2B","double C2-like domains, beta"
-"chr17",41739082,41739246,165,"*","Promoter (<=1kb)",17,41717758,41739262,21505,2,"4222",16,"ENSG00000005102","MEOX1","mesenchyme homeobox 1"
-"chr5",16616462,16617242,781,"*","Promoter (<=1kb)",5,16473147,16617167,144021,2,"54463",0,"ENSG00000154153","FAM134B","family with sequence similarity 134 member B"
-"chr2",232651038,232651061,24,"*","Intron (uc010fxy.1/64708, intron 1 of 5)",2,232646445,232673434,26990,1,"64708",4593,"ENSG00000144524","COPS7B","COP9 signalosome subunit 7B"
-"chr20",43029652,43029847,196,"*","Intron (uc010zwo.1/3172, intron 2 of 3)",20,43036760,43036843,84,1,"100500813",-6913,"ENSG00000266151","MIR3646","microRNA 3646"
-"chr1",161129091,161129122,32,"*","Promoter (<=1kb)",1,161129254,161135516,6263,1,"27005",-132,"ENSG00000143258","USP21","ubiquitin specific peptidase 21"
-"chr14",52216412,52216656,245,"*","Distal Intergenic",14,52313952,52436518,122567,1,"54331",-97296,"ENSG00000186469","GNG2","G protein subunit gamma 2"
-"chr18",61368814,61369206,393,"*","Promoter (<=1kb)",18,61370085,61393666,23582,1,"89778",-879,"ENSG00000206072","SERPINB11","serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene)"
-"chr2",220083306,220083454,149,"*","Promoter (1-2kb)",2,220074488,220085174,10687,2,"10058",1720,"ENSG00000115657","ABCB6","ATP binding cassette subfamily B member 6 (Langereis blood group)"
-"chr1",33815638,33815702,65,"*","Intron (uc001bxg.1/1912, intron 6 of 13)",1,33797994,33798093,100,2,"100500853",-17545,NA,"MIR3605","microRNA 3605"
-"chr12",54366859,54366875,17,"*","Promoter (<=1kb)",12,54366910,54370203,3294,1,"3227",-35,"ENSG00000123388","HOXC11","homeobox C11"
-"chr6",170361194,170361827,634,"*","Distal Intergenic",6,170188886,170198921,10036,2,"401288",-162273,"ENSG00000229214","LINC00242","long intergenic non-protein coding RNA 242"
-"chr10",118900416,118900422,7,"*","Promoter (2-3kb)",10,118888032,118897812,9781,2,"11023",-2604,"ENSG00000148704","VAX1","ventral anterior homeobox 1"
-"chr7",4841387,4841835,449,"*","Exon (uc003sng.1/55698, exon 12 of 16)",7,4828196,4828270,75,2,"100616465",-13117,"ENSG00000264474","MIR4656","microRNA 4656"
-"chr7",56551592,56552034,443,"*","Distal Intergenic",7,56563916,56564977,1062,1,"222029",-11882,NA,"DKFZp434L192","uncharacterized protein DKFZp434L192"
-"chr1",65533502,65533851,350,"*","Distal Intergenic",1,65524117,65524191,75,2,"406893",-9311,"ENSG00000199135","MIR101-1","microRNA 101-1"
-"chr12",120755328,120755363,36,"*","Distal Intergenic",12,120759914,120765592,5679,2,"5319",10229,"ENSG00000170890","PLA2G1B","phospholipase A2 group IB"
-"chr10",665054,665510,457,"*","Intron (uc001ifp.3/22982, intron 36 of 36)",10,687629,687718,90,2,"100847086",22208,"ENSG00000263511","MIR5699","microRNA 5699"
-"chr5",135265705,135265801,97,"*","Promoter (<=1kb)",5,135266006,135287280,21275,1,"26223",-205,NA,"FBXL21","F-box and leucine-rich repeat protein 21 (gene/pseudogene)"
-"chr3",9885753,9886090,338,"*","Promoter (<=1kb)",3,9879533,9885702,6170,2,"285367",-51,"ENSG00000156990","RPUSD3","RNA pseudouridylate synthase domain containing 3"
-"chr1",226187478,226187828,351,"*","Promoter (<=1kb)",1,226170403,226187066,16664,2,"163859",-412,"ENSG00000143751","SDE2","SDE2 telomere maintenance homolog (S. pombe)"
-"chr12",57853743,57853920,178,"*","Promoter (<=1kb)",12,57853918,57866047,12130,1,"2735",0,"ENSG00000111087","GLI1","GLI family zinc finger 1"
-"chr8",17104455,17104487,33,"*","Promoter (<=1kb)",8,17104401,17155533,51133,1,"137492",54,"ENSG00000155975","VPS37A","VPS37A, ESCRT-I subunit"
-"chr13",100611510,100611817,308,"*","Distal Intergenic",13,100615275,100624178,8904,2,"85416",12361,"ENSG00000139800","ZIC5","Zic family member 5"
-"chr12",112563230,112563241,12,"*","Promoter (<=1kb)",12,112563349,112591408,28060,1,"10906",-108,"ENSG00000135148","TRAFD1","TRAF-type zinc finger domain containing 1"
-"chr18",34973942,34973956,15,"*","Intron (uc002lae.2/56853, intron 11 of 12)",18,34823008,35146000,322993,2,"56853",172044,"ENSG00000101489","CELF4","CUGBP, Elav-like family member 4"
-"chr17",259930,259942,13,"*","Promoter (<=1kb)",17,260118,264457,4340,1,"400566",-176,"ENSG00000187624","C17orf97","chromosome 17 open reading frame 97"
-"chr9",127615385,127616076,692,"*","Promoter (<=1kb)",9,127615696,127620170,4475,1,"401551",0,"ENSG00000136918","WDR38","WD repeat domain 38"
-"chr6",31926840,31926915,76,"*","5' UTR",6,32485154,32557613,72460,2,"3127",630698,"ENSG00000198502","HLA-DRB5","major histocompatibility complex, class II, DR beta 5"
-"chr7",4913514,4913712,199,"*","Intron (uc003sng.1/55698, intron 14 of 15)",7,4834285,4923335,89051,2,"55698",9623,"ENSG00000157927","RADIL","Ras association and DIL domains"
-"chr22",37914206,37914811,606,"*","Promoter (<=1kb)",22,37875383,37915378,39996,2,"29775",567,"ENSG00000100065","CARD10","caspase recruitment domain family member 10"
-"chr12",6798404,6798535,132,"*","Promoter (<=1kb)",12,6775643,6798738,23096,2,"171017",203,"ENSG00000126746","ZNF384","zinc finger protein 384"
-"chr3",43663331,43663662,332,"*","Promoter (<=1kb)",3,43407818,43663560,255743,2,"55129",0,"ENSG00000160746","ANO10","anoctamin 10"
-"chr2",3642400,3642581,182,"*","Promoter (<=1kb)",2,3642422,3692234,49813,1,"78989",0,"ENSG00000118004","COLEC11","collectin subfamily member 11"
-"chr5",161494450,161494467,18,"*","Promoter (<=1kb)",5,161494648,161582545,87898,1,"2566",-181,"ENSG00000113327","GABRG2","gamma-aminobutyric acid type A receptor gamma2 subunit"
-"chr15",45315313,45315362,50,"*","Promoter (<=1kb)",15,45315302,45367287,51986,1,"6652",11,"ENSG00000140263","SORD","sorbitol dehydrogenase"
-"chr17",73851651,73851978,328,"*","Promoter (<=1kb)",17,73841780,73851501,9722,2,"23558",-150,"ENSG00000132471","WBP2","WW domain binding protein 2"
-"chr4",107956508,107957024,517,"*","5' UTR",4,107842959,108204846,361888,2,"27123",247822,"ENSG00000155011","DKK2","dickkopf WNT signaling pathway inhibitor 2"
-"chr3",139257229,139257727,499,"*","Promoter (<=1kb)",3,139236276,139258671,22396,2,"5947",944,"ENSG00000114115","RBP1","retinol binding protein 1"
-"chr16",1413965,1414480,516,"*","3' UTR",16,1401900,1413352,11453,1,"84572",12065,"ENSG00000090581","GNPTG","N-acetylglucosamine-1-phosphate transferase gamma subunit"
-"chr12",5541205,5541234,30,"*","Promoter (<=1kb)",12,5541280,5604465,63186,1,"4908",-46,"ENSG00000185652","NTF3","neurotrophin 3"
-"chr1",238024463,238024671,209,"*","Promoter (<=1kb)",1,238025475,238091619,66145,1,"100130331",-804,"ENSG00000237250","LOC100130331","POTE ankyrin domain family, member F pseudogene"
-"chr22",43506457,43506480,24,"*","Promoter (<=1kb)",22,43506754,43525718,18965,1,"638",-274,"ENSG00000100290","BIK","BCL2-interacting killer"
-"chr20",865906,866039,134,"*","Exon (uc002wei.3/51378, exon 4 of 9)",20,853297,896960,43664,2,"51378",30921,"ENSG00000101280","ANGPT4","angiopoietin 4"
-"chr7",94294857,94295579,723,"*","3' UTR",7,94285637,94299006,13370,1,"23089",9220,"ENSG00000242265","PEG10","paternally expressed 10"
-"chr5",138609337,138609700,364,"*","Promoter (<=1kb)",5,138609441,138618873,9433,1,"724102",0,NA,"SNHG4","small nucleolar RNA host gene 4"
-"chr6",86353836,86353970,135,"*","Promoter (<=1kb)",6,86317502,86353043,35542,2,"10492",-793,"ENSG00000135316","SYNCRIP","synaptotagmin binding, cytoplasmic RNA interacting protein"
-"chr12",122687992,122688186,195,"*","Promoter (<=1kb)",12,122688228,122692084,3857,1,"79369",-42,"ENSG00000176383","B3GNT4","UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4"
-"chr16",1014544,1014975,432,"*","Intron (uc010bri.2/64788, intron 7 of 7)",16,903635,1031318,127684,2,"64788",16343,"ENSG00000103227","LMF1","lipase maturation factor 1"
-"chr18",13801222,13801271,50,"*","Distal Intergenic",18,13825543,13826861,1319,1,"4161",-24272,"ENSG00000176136","MC5R","melanocortin 5 receptor"
-"chr21",40817848,40817988,141,"*","Promoter (<=1kb)",21,40817797,40887433,69637,1,"6450",51,"ENSG00000185437","SH3BGR","SH3 domain binding glutamate rich protein"
-"chr17",29335105,29335669,565,"*","Distal Intergenic",17,29302353,29303017,665,1,"503645",32752,"ENSG00000264743","DPRXP4","divergent-paired related homeobox pseudogene 4"
-"chr2",33824342,33824362,21,"*","Promoter (<=1kb)",2,33808729,33824362,15634,2,"25940",0,"ENSG00000119812","FAM98A","family with sequence similarity 98 member A"
-"chr1",38470578,38470622,45,"*","Promoter (<=1kb)",1,38462442,38471187,8746,2,"2275",565,"ENSG00000183386","FHL3","four and a half LIM domains 3"
-"chr9",5449890,5450535,646,"*","Promoter (<=1kb)",9,5450503,5470567,20065,1,"29126",0,"ENSG00000120217","CD274","CD274 molecule"
-"chr5",1061253,1061289,37,"*","Promoter (1-2kb)",5,1063011,1063089,79,2,"100616479",1800,"ENSG00000263834","MIR4635","microRNA 4635"
-"chr10",131934684,131934715,32,"*","Promoter (<=1kb)",10,131934639,131982785,48147,1,"10539",45,"ENSG00000108010","GLRX3","glutaredoxin 3"
-"chr2",33172394,33172396,3,"*","Promoter (<=1kb)",2,33172369,33624575,452207,1,"4052",25,"ENSG00000049323","LTBP1","latent transforming growth factor beta binding protein 1"
-"chr17",78820876,78821024,149,"*","Intron (uc010wuf.1/57521, intron 10 of 11)",17,78965641,78973933,8293,1,"79643",-144617,"ENSG00000176108","CHMP6","charged multivesicular body protein 6"
-"chr2",32581942,32582034,93,"*","Promoter (<=1kb)",2,32582096,32843965,261870,1,"57448",-62,"ENSG00000115760","BIRC6","baculoviral IAP repeat containing 6"
-"chr4",2011033,2011051,19,"*","Promoter (<=1kb)",4,1984441,2010962,26522,2,"7469",-71,"ENSG00000185049","NELFA","negative elongation factor complex member A"
-"chr10",122217348,122217422,75,"*","Promoter (<=1kb)",10,122216466,122349367,132902,1,"196051",882,"ENSG00000203805","PLPP4","phospholipid phosphatase 4"
-"chr1",166134346,166134465,120,"*","Promoter (1-2kb)",1,166026690,166135958,109269,2,"149297",1493,"ENSG00000188859","FAM78B","family with sequence similarity 78 member B"
-"chr5",56247905,56248185,281,"*","5' UTR",5,56215429,56267502,52074,2,"166968",19317,"ENSG00000155545","MIER3","MIER family member 3"
-"chr12",130823838,130823967,130,"*","Promoter (1-2kb)",12,130822433,130856877,34445,1,"9271",1405,"ENSG00000125207","PIWIL1","piwi-like RNA-mediated gene silencing 1"
-"chr7",12250712,12250857,146,"*","Promoter (<=1kb)",7,12250848,12276890,26043,1,"54664",0,"ENSG00000106460","TMEM106B","transmembrane protein 106B"
-"chr2",242810869,242811101,233,"*","Promoter (<=1kb)",2,242811886,242815482,3597,1,"285093",-785,"ENSG00000277949","RTP5","receptor (chemosensory) transporter protein 5 (putative)"
-"chr11",62139609,62139710,102,"*","Intron (uc001nte.4/80150, intron 4 of 6)",11,62104774,62160887,56114,1,"80150",34835,"ENSG00000162174","ASRGL1","asparaginase like 1"
-"chr4",40045334,40045641,308,"*","Exon (uc011byr.1/344967, exon 3 of 3)",4,40058524,40159872,101349,1,"55728",-12883,"ENSG00000078177","N4BP2","NEDD4 binding protein 2"
-"chr17",8648514,8649122,609,"*","Promoter (<=1kb)",17,8633246,8648154,14909,2,"146849",-360,"ENSG00000161973","CCDC42","coiled-coil domain containing 42"
-"chr20",3762064,3762119,56,"*","Promoter (<=1kb)",20,3758151,3762102,3952,2,"25876",0,"ENSG00000101222","SPEF1","sperm flagellar 1"
-"chr11",2235203,2235402,200,"*","Distal Intergenic",11,2194293,2194368,76,1,"100616126",40910,"ENSG00000265258","MIR4686","microRNA 4686"
-"chr6",29945051,29945155,105,"*","Intron (uc021ytw.1/3136, intron 3 of 4)",6,28471073,28483570,12498,2,"257202",-1461481,"ENSG00000198704","GPX6","glutathione peroxidase 6"
-"chr12",132863782,132863935,154,"*","Intron (uc001ukc.4/50614, intron 10 of 10)",12,132851977,132857486,5510,1,"100130238",11805,NA,"LOC100130238","uncharacterized LOC100130238"
-"chr2",238535997,238536058,62,"*","Promoter (<=1kb)",2,238536224,238690290,154067,1,"9208",-166,"ENSG00000124831","LRRFIP1","leucine rich repeat (in FLII) interacting protein 1"
-"chr2",66660414,66660793,380,"*","Promoter (<=1kb)",2,66650475,66660602,10128,2,"730198",0,NA,"MEIS1-AS3","MEIS1 antisense RNA 3"
-"chr15",51385764,51385868,105,"*","Intron (uc001zyy.3/388121, intron 1 of 2)",15,51348799,51397473,48675,2,"388121",11605,"ENSG00000183578","TNFAIP8L3","TNF alpha induced protein 8 like 3"
-"chr7",5632221,5632224,4,"*","Promoter (<=1kb)",7,5632436,5646287,13852,1,"6624",-212,"ENSG00000075618","FSCN1","fascin actin-bundling protein 1"
-"chr17",46621964,46622037,74,"*","Promoter (<=1kb)",17,46621713,46628603,6891,1,"100874362",251,"ENSG00000230148","HOXB-AS1","HOXB cluster antisense RNA 1"
-"chr16",1071052,1071884,833,"*","Distal Intergenic",16,1031808,1036979,5172,1,"30812",39244,"ENSG00000005513","SOX8","SRY-box 8"
-"chr1",111506641,111506667,27,"*","Promoter (<=1kb)",1,111489812,111506566,16755,2,"55791",-75,"ENSG00000121931","LRIF1","ligand dependent nuclear receptor interacting factor 1"
-"chr8",74361002,74361220,219,"*","Intron (uc003xzm.3/27067, intron 2 of 14)",8,74332309,74353753,21445,1,"100128126",28693,"ENSG00000253302","STAU2-AS1","STAU2 antisense RNA 1"
-"chr10",102045962,102046095,134,"*","Promoter (<=1kb)",10,102033035,102046469,13435,2,"282991",374,"ENSG00000196072","BLOC1S2","biogenesis of lysosomal organelles complex 1 subunit 2"
-"chr16",8941568,8941747,180,"*","3' UTR",16,8946799,8962869,16071,2,"23589",21122,"ENSG00000153048","CARHSP1","calcium regulated heat stable protein 1"
-"chr22",39898368,39898620,253,"*","Promoter (2-3kb)",22,39896105,39914137,18033,1,"54471",2263,"ENSG00000100335","MIEF1","mitochondrial elongation factor 1"
-"chr13",112547370,112547823,454,"*","Distal Intergenic",13,112721913,112726020,4108,1,"6656",-174090,"ENSG00000182968","SOX1","SRY-box 1"
-"chr8",57906058,57906543,486,"*","Promoter (<=1kb)",8,57870488,57906430,35943,2,"54928",0,"ENSG00000104331","IMPAD1","inositol monophosphatase domain containing 1"
-"chr1",45672438,45672524,87,"*","Promoter (<=1kb)",1,45482076,45672250,190175,2,"57643",-188,"ENSG00000162415","ZSWIM5","zinc finger SWIM-type containing 5"
-"chr12",90102506,90102530,25,"*","Promoter (<=1kb)",12,90102732,90105729,2998,1,"338758",-202,"ENSG00000271614","LINC00936","long intergenic non-protein coding RNA 936"
-"chr21",11098970,11099431,462,"*","Promoter (<=1kb)",21,11057796,11098937,41142,2,"574",-33,NA,"BAGE","B melanoma antigen"
-"chr10",135266836,135267307,472,"*","Promoter (<=1kb)",10,135267432,135337062,69631,1,"619207",-125,"ENSG00000214279","SCART1","scavenger receptor protein family member"
-"chr1",29449036,29449356,321,"*","Promoter (1-2kb)",1,29445937,29450421,4485,2,"399474",1065,"ENSG00000253304","TMEM200B","transmembrane protein 200B"
-"chr16",84178556,84178891,336,"*","Promoter (<=1kb)",16,84155744,84178800,23057,2,"83693",0,"ENSG00000103160","HSDL1","hydroxysteroid dehydrogenase like 1"
-"chr7",74489845,74489851,7,"*","Promoter (<=1kb)",7,74456283,74489699,33417,2,"81554",-146,"ENSG00000274523","WBSCR16","Williams-Beuren syndrome chromosome region 16"
-"chr6",31758849,31758862,14,"*","Intron (uc003nxe.3/7407, intron 22 of 29)",6,32485154,32557613,72460,2,"3127",798751,"ENSG00000198502","HLA-DRB5","major histocompatibility complex, class II, DR beta 5"
-"chr6",125475315,125475385,71,"*","Promoter (<=1kb)",6,125474879,125584644,109766,1,"7164",436,"ENSG00000111907","TPD52L1","tumor protein D52-like 1"
-"chr6",31854781,31854834,54,"*","Exon (uc003nxy.1/10919, exon 15 of 27)",6,32485154,32557613,72460,2,"3127",702779,"ENSG00000198502","HLA-DRB5","major histocompatibility complex, class II, DR beta 5"
-"chr14",73393231,73393894,664,"*","Promoter (<=1kb)",14,73393040,73426357,33318,1,"26094",191,"ENSG00000119599","DCAF4","DDB1 and CUL4 associated factor 4"
-"chr14",101052970,101053354,385,"*","Distal Intergenic",14,101003484,101036131,32648,2,"57596",-16839,"ENSG00000183092","BEGAIN","brain enriched guanylate kinase associated"
-"chr19",41196603,41196729,127,"*","Promoter (<=1kb)",19,41171812,41196556,24745,2,"9253",-47,"ENSG00000105245","NUMBL","numb homolog (Drosophila)-like"
-"chr1",181057597,181057798,202,"*","Promoter (<=1kb)",1,181057638,181059979,2342,1,"51278",0,"ENSG00000162783","IER5","immediate early response 5"
-"chr2",20549724,20550531,808,"*","Promoter (<=1kb)",2,20448453,20550463,102011,2,"23369",0,"ENSG00000055917","PUM2","pumilio RNA binding family member 2"
-"chr15",41795039,41795304,266,"*","Exon (uc001znz.3/3706, exon 6 of 7)",15,41786056,41795757,9702,1,"3706",8983,"ENSG00000137825","ITPKA","inositol-trisphosphate 3-kinase A"
-"chr16",2125627,2125989,363,"*","Exon (uc002con.3/7249, exon 23 of 42)",16,2140196,2140285,90,2,"100188847",14296,"ENSG00000221656","MIR1225","microRNA 1225"
-"chr8",113655436,113655967,532,"*","Promoter (<=1kb)",8,113655722,113655812,91,1,"100302225",0,"ENSG00000238399","MIR2053","microRNA 2053"
-"chr1",159771327,159771711,385,"*","Promoter (1-2kb)",1,159770301,159786047,15747,1,"343413",1026,"ENSG00000181036","FCRL6","Fc receptor like 6"
-"chr17",8013409,8013632,224,"*","Exon (uc002gka.3/59344, exon 9 of 15)",17,7999218,8022234,23017,2,"59344",8602,"ENSG00000179148","ALOXE3","arachidonate lipoxygenase 3"
-"chr19",42584469,42584732,264,"*","Exon (uc002osk.4/64763, exon 2 of 2)",19,42572629,42585720,13092,1,"64763",11840,"ENSG00000105732","ZNF574","zinc finger protein 574"
-"chr16",1495122,1495787,666,"*","Promoter (<=1kb)",16,1484389,1494490,10102,2,"645811",-632,"ENSG00000197599","CCDC154","coiled-coil domain containing 154"
-"chr4",1362393,1362864,472,"*","Intron (uc003gde.4/57654, intron 8 of 13)",4,1341104,1381837,40734,1,"57654",21289,"ENSG00000163945","UVSSA","UV stimulated scaffold protein A"
-"chr18",21452682,21452788,107,"*","Intron (uc002kuq.3/3909, intron 38 of 74)",18,21572737,21715574,142838,1,"125488",-119949,"ENSG00000168234","TTC39C","tetratricopeptide repeat domain 39C"
-"chr15",79237145,79237217,73,"*","Promoter (<=1kb)",15,79214092,79237420,23329,2,"1512",203,"ENSG00000103811","CTSH","cathepsin H"
-"chr6",21667407,21667815,409,"*","Promoter (2-3kb)",6,21665003,22214734,549732,1,"401237",2404,"ENSG00000272168","CASC15","cancer susceptibility candidate 15 (non-protein coding)"
-"chr7",114329849,114329956,108,"*","Exon (uc003vgu.3/93986, exon 20 of 20)",7,114293400,114293510,111,1,"100500896",36449,"ENSG00000272230","MIR3666","microRNA 3666"
-"chr8",107281773,107281984,212,"*","Promoter (<=1kb)",8,107282406,107764921,482516,1,"55074",-422,"ENSG00000164830","OXR1","oxidation resistance 1"
-"chr6",34433754,34433775,22,"*","Promoter (<=1kb)",6,34433838,34503000,69163,1,"29993",-63,"ENSG00000124507","PACSIN1","protein kinase C and casein kinase substrate in neurons 1"
-"chr5",60457793,60458176,384,"*","Promoter (<=1kb)",5,60453536,60458302,4767,2,"643155",126,"ENSG00000188725","SMIM15","small integral membrane protein 15"
-"chr7",987309,987411,103,"*","Intron (uc003sjo.4/11033, intron 10 of 10)",7,937537,1015235,77699,2,"11033",27824,"ENSG00000105963","ADAP1","ArfGAP with dual PH domains 1"
-"chr5",126112605,126112609,5,"*","Promoter (<=1kb)",5,126112315,126172712,60398,1,"4001",290,"ENSG00000113368","LMNB1","lamin B1"
-"chr11",7052239,7052589,351,"*","Intron (uc001mfb.1/338323, intron 1 of 11)",11,7041700,7092757,51058,1,"338323",10539,"ENSG00000158077","NLRP14","NLR family, pyrin domain containing 14"
-"chr7",27154537,27154720,184,"*","Intron (uc011jzl.2/3200, intron 2 of 2)",7,27145809,27166639,20831,2,"3200",11919,"ENSG00000105997","HOXA3","homeobox A3"
-"chr14",102228216,102228754,539,"*","Promoter (<=1kb)",14,102228135,102394328,166194,1,"5527",81,"ENSG00000078304","PPP2R5C","protein phosphatase 2 regulatory subunit B', gamma"
-"chr5",137368318,137368839,522,"*","Promoter (<=1kb)",5,137273642,137368802,95161,2,"51306",0,"ENSG00000031003","FAM13B","family with sequence similarity 13 member B"
-"chr1",17020409,17020878,470,"*","Intron (uc001azn.1/284729, intron 1 of 10)",1,17017713,17046652,28940,2,"284729",25774,"ENSG00000268869","ESPNP","espin pseudogene"
-"chr1",50513749,50513870,122,"*","Promoter (<=1kb)",1,50513686,50667540,153855,1,"1996",63,"ENSG00000162374","ELAVL4","ELAV like neuron-specific RNA binding protein 4"
-"chr16",1662753,1663216,464,"*","Promoter (<=1kb)",16,1560428,1662109,101682,2,"9742",-644,"ENSG00000187535","IFT140","intraflagellar transport 140"
-"chr6",164051690,164052180,491,"*","Distal Intergenic",6,163835675,163999628,163954,1,"9444",216015,"ENSG00000112531","QKI","QKI, KH domain containing, RNA binding"
-"chr1",6341279,6341287,9,"*","Exon (uc001amq.3/11332, exon 8 of 9)",1,6307406,6321035,13630,2,"387509",-20244,"ENSG00000158292","GPR153","G protein-coupled receptor 153"
-"chr17",75398290,75398583,294,"*","5' UTR",17,75393066,75393136,71,2,"100422851",-5154,"ENSG00000264060","MIR4316","microRNA 4316"
-"chr7",65420025,65420249,225,"*","Exon (uc003tum.1/uc003tum.1, exon 1 of 1)",7,65425673,65447301,21629,2,"2990",27052,"ENSG00000169919","GUSB","glucuronidase, beta"
-"chrX",3264384,3264695,312,"*","Promoter (<=1kb)",23,3226609,3264684,38076,2,"25878",0,"ENSG00000101825","MXRA5","matrix-remodelling associated 5"
-"chr16",11944926,11945018,93,"*","Promoter (<=1kb)",16,11928055,11945442,17388,2,"26156",424,"ENSG00000171490","RSL1D1","ribosomal L1 domain containing 1"
-"chr3",122785780,122786043,264,"*","Promoter (<=1kb)",3,122785856,122880953,95098,1,"10954",0,"ENSG00000065485","PDIA5","protein disulfide isomerase family A member 5"
-"chr7",44579223,44579467,245,"*","Promoter (1-2kb)",7,44552135,44580914,28780,2,"29881",1447,"ENSG00000015520","NPC1L1","NPC1-like 1"
-"chr16",49499189,49499613,425,"*","Distal Intergenic",16,49407808,49433319,25512,1,"123970",91381,"ENSG00000166152","C16orf78","chromosome 16 open reading frame 78"
-"chr4",4173030,4173449,420,"*","Distal Intergenic",4,4190530,4228621,38092,2,"133060",55172,"ENSG00000163982","OTOP1","otopetrin 1"
-"chr7",94953680,94953722,43,"*","Exon (uc003uns.3/5444, exon 1 of 9)",7,94927669,95025687,98019,2,"5444",71965,"ENSG00000005421","PON1","paraoxonase 1"
-"chr8",67579548,67579568,21,"*","Promoter (<=1kb)",8,67542488,67579452,36965,2,"80124",-96,"ENSG00000175073","VCPIP1","valosin containing protein (p97)/p47 complex interacting protein 1"
-"chr5",33936472,33936704,233,"*","Promoter (<=1kb)",5,33936491,33939023,2533,1,"51289",0,"ENSG00000277069","RXFP3","relaxin/insulin-like family peptide receptor 3"
-"chr16",30709114,30709518,405,"*","Promoter (<=1kb)",16,30709025,30709810,786,2,"730183",292,NA,"LOC730183","uncharacterized LOC730183"
-"chr7",128379067,128379252,186,"*","Promoter (<=1kb)",7,128379346,128413477,34132,1,"813",-94,"ENSG00000128595","CALU","calumenin"
-"chr17",37843745,37843818,74,"*","Promoter (<=1kb)",17,37827375,37844310,16936,2,"93210",492,"ENSG00000161395","PGAP3","post-GPI attachment to proteins 3"
-"chr19",45885800,45885940,141,"*","Exon (uc002pbm.3/10848, exon 5 of 6)",19,45854649,45873845,19197,2,"2068",-11955,"ENSG00000104884","ERCC2","excision repair cross-complementation group 2"
-"chr2",177012143,177012324,182,"*","Promoter (2-3kb)",2,177015031,177015140,110,1,"406903",-2707,"ENSG00000207744","MIR10B","microRNA 10b"
-"chr4",132651854,132652065,212,"*","Distal Intergenic",4,134070470,134112732,42263,1,"57575",-14