Mercurial > repos > testtool > find_dmr

changeset 11:24ac6f93cc3e draft

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Uploaded
author testtool
date Thu, 11 May 2017 11:26:02 -0400
parents 7df2b7d79391
children 083895dbc289
files findDMR/findDMR.R
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/findDMR/findDMR.R	Thu May 11 11:15:33 2017 -0400
+++ b/findDMR/findDMR.R	Thu May 11 11:26:02 2017 -0400
@@ -1,3 +1,7 @@
+require("BiocGenerics", quietly = TRUE)
+require("data.table", quietly = TRUE)
+require("bumphunter", quietly = TRUE)
+
 args <- commandArgs(trailingOnly = TRUE)
 GSMTable = args[1]
 platform = args[2]
@@ -28,7 +32,6 @@
 DMRInfo <- data.table(DMRTable$chr, DMRTable$start, DMRTable$end)
 
 
-
 write.table(
   DMRInfo,
   DMR,