Mercurial > repos > testtool > geo_data
comparison GRsetFromGEO/GRsetFromGEO.xml @ 61:599b80e9eb5b draft
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| author | testtool |
|---|---|
| date | Fri, 28 Apr 2017 09:19:22 -0400 |
| parents | 602e747a6d31 |
| children |
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| 60:602e747a6d31 | 61:599b80e9eb5b |
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| 1 <?xml version="1.0" encoding="UTF-8"?> | |
| 1 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2"> | 2 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2"> |
| 2 <description> | 3 <description> |
| 3 Reading Illumina methylation array data from GEO | 4 Reading Illumina methylation array data from GEO |
| 4 </description> | 5 </description> |
| 5 <macros> | 6 <macros> |
| 6 <import>GRsetFromGEO_macros.xml</import> | 7 <import>GRsetFromGEO_macros.xml</import> |
| 7 </macros> | 8 </macros> |
| 9 <expand macro="requirements" /> | |
| 8 <stdio> | 10 <stdio> |
| 9 <exit_code range="1:" /> | 11 <exit_code range="1:" /> |
| 10 </stdio> | 12 </stdio> |
| 11 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> | 13 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> |
| 12 <inputs> | 14 <inputs> |