Mercurial > repos > testtool > geo_data

diff GRsetFromGEO/GRsetFromGEO.R @ 70:759073309c9c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Fri, 09 Jun 2017 11:48:24 -0400
parents f84cadc1fdd6
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GRsetFromGEO/GRsetFromGEO.R	Fri Jun 09 11:48:24 2017 -0400
@@ -0,0 +1,12 @@
+require("minfi", quietly = TRUE)
+
+options(warn = -1)
+options("download.file.method"="wget")
+
+args <- commandArgs(trailingOnly = TRUE)
+GSE = args[1] 
+output = args[2] 
+
+GRset <- getGenomicRatioSetFromGEO(GSE)
+
+save(GRset,file = output)