Mercurial > repos > testtool > geo_data
diff GRsetFromGEO/GRsetFromGEO.R @ 55:f84cadc1fdd6 draft
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author | testtool |
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date | Tue, 25 Apr 2017 11:03:34 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GRsetFromGEO/GRsetFromGEO.R Tue Apr 25 11:03:34 2017 -0400 @@ -0,0 +1,12 @@ +require("minfi", quietly = TRUE) + +options(warn = -1) +options("download.file.method"="wget") + +args <- commandArgs(trailingOnly = TRUE) +GSE = args[1] +output = args[2] + +GRset <- getGenomicRatioSetFromGEO(GSE) + +save(GRset,file = output)