Mercurial > repos > testtool > geo_data

view GRsetFromGEO/GRsetFromGEO.R @ 59:210823033b07 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Fri, 28 Apr 2017 08:01:31 -0400
parents f84cadc1fdd6
children
line wrap: on
line source

require("minfi", quietly = TRUE)

options(warn = -1)
options("download.file.method"="wget")

args <- commandArgs(trailingOnly = TRUE)
GSE = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(GSE)

save(GRset,file = output)