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view getGRsetFromGEO/getGRsetFromGEO.R @ 11:983651783ce9 draft

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author testtool
date Wed, 22 Mar 2017 09:01:06 -0400
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require("minfi", quietly = TRUE)

options(warn = -1)
options("download.file.method"="wget")

args <- commandArgs(trailingOnly = TRUE)

GSE = args[1] #GSE51547
output = args[2] #output <- ("GEOdata.txt")

GEO <- getGenomicRatioSetFromGEO(GSE)

save(GEO, ascii=TRUE, file=output)