Mercurial > repos > testtool > geo_data
changeset 39:925945cca45f draft
Uploaded
| author | testtool |
|---|---|
| date | Mon, 24 Apr 2017 09:29:38 -0400 |
| parents | baded0f1630d |
| children | 234e990e8e1d |
| files | GRsetFromGEO/GRsetFromGEO.xml |
| diffstat | 1 files changed, 9 insertions(+), 10 deletions(-) [+] |
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--- a/GRsetFromGEO/GRsetFromGEO.xml Mon Apr 24 09:17:26 2017 -0400 +++ b/GRsetFromGEO/GRsetFromGEO.xml Mon Apr 24 09:29:38 2017 -0400 @@ -1,6 +1,6 @@ -<tool id="GRset" name="GRsetFromGEO" version="1.16.2"> +<tool id="GetGEO" name="GRsetFromGEO" version="1.16.2"> <description> -Reading Illumina methylation array data from GEO + Reading Illumina methylation array data from GEO </description> <requirements> <requirement type="package" version="3.2.1">R</requirement> @@ -10,9 +10,7 @@ </stdio> <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> <inputs> - <param optional="false" format="txt" name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"> - <validator type="empty_field" message="This field is required."/> - </param> + <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> </inputs> <outputs> <data format="rdata" name="output" label="GRsetFromGEO.rdata"/> @@ -20,18 +18,19 @@ <tests> <test> <param name="test"> - <element name="test-data"/> + <element name="test-data"> <collection type="data"> - <element name="GSE" value="GSE51547"/> + <element name="GSE" value="GSE51547"/> </collection> + </element> </param> - <output format="rdata" name="output" label="test-data/out.rdata"/> + <output format="rdata" name="output" label="test-data/out.Rdata"/> </test> </tests> <help> -**Reading Illumina methylation array data from GEO** +**Description** </help> <citations> -DMR +GEO </citations> </tool>