Mercurial > repos > testtool > get_geo

changeset 35:0262f5edecb9 draft

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Uploaded
author testtool
date Thu, 09 Feb 2017 09:56:43 -0500
parents 6025fa3bfc40
children a266a7c268e9
files GEO/getGEO.xml
diffstat 1 files changed, 5 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/GEO/getGEO.xml	Thu Feb 09 09:54:46 2017 -0500
+++ b/GEO/getGEO.xml	Thu Feb 09 09:56:43 2017 -0500
@@ -1,20 +1,18 @@
 <tool id="GEO" name="getGEO" version="1.16.2">
+  <?xml version='1.0' encoding='utf-8'?>
   <requirements>
          <requirement type="package" version="3.2.1">R</requirement>
      </requirements>
-     <stdio>
-         <exit_code> range="1:" level="fatal" </exit_code>
-     </stdio>
   <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command>
   <inputs>
     <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
-      <validator> type="empty_field" message="This field is required."</validator>
+      <validator type="empty_field" message="This field is required."/>
     </param>
   </inputs>
   <outputs>
-    <data> format="csv" name="MetaTable" label="MetaData.csv" </data>
-    <data> format="csv" name="IlmnTable" label="IlmnData.csv"</data>
-    <data> format="csv" name="gmTable" label="gmSet.csv"</data>
+    <data format="csv" name="MetaTable" label="MetaData.csv"/>
+    <data format="csv" name="IlmnTable" label="IlmnData.csv"/>
+    <data format="csv" name="gmTable" label="gmSet.csv"/>
   </outputs>
   <tests>
     <test>